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. 2021 Mar 29;17(3):e1009464. doi: 10.1371/journal.ppat.1009464

Table 2. Distribution of unique and shared Gram-negative bacterial survival and virulence associated genes across bovine and human treponemes.

Treponema medium ATCC 700293T Treponema medium T19 DSM 18689 Treponema phagedenis Reiter Treponema phagedenis T320A DSM 18690 Treponema pedis T3552BT DSM 18691 Treponema pedis A4 Treponema ruminis DSM 103462T Treponema denticola ATCC 35405 Treponema pallidum subsp. pallidum Nichols T. paraluiscuniculi
Cuniculi A
Host human bovine Human Bovine Bovine porcine bovine human human rabbit
Hemolysins1 3 3 3 3 3 3 0 4 1 1
Toxins1 Tetanolysin O (1) Tetanolysin O (2) 0 0 0 0 0 0 0 0
Eukaryotic-like Domains (ELDs)/Proteins containing ELDs 2 18/42 41/72 22/45 27/112 23/55 23/81 18/46 27/114 6/8 5/6
Complete secretion systems2 0 0 0 0 0 0 0 0 0 0
RHS/YD repeats1 0 0 0 0 47 45 0 4 0 0
Oxidative stress related3 42 46 43 44 49 49 42 40 24 24
Toxin:Antitoxin systems1 VapC (8)
HicA (3)
PIN
HicB
RelE/ParE (6)
PemK/MazF BrnT (8)
RelE (2)
RelB/DinJ (5)
RelB/StbE
PhD/YefM (4)
Txe/YoeB (2)
AbiEii/AbiGii
VapC (8)
HicA (3)
PIN
HicB
RelE/ParE (7)
PemK/MazF BrnT (10)
RelE (2)
RelB/DinJ (4)
RelB/StbE
PhD/YefM (4)
Txe/YoeB (2)
AbiEii/AbiGii
HicA
Txe/YoeB
HicA
Txe/YoeB
RelE/ParE (2)
RelB/DinJ (3)
Txe/YoeB (3)
YafQ
VapC (2)
PhD/YefM
RelE/ParE (2)
RelB/DinJ (3)
Txe/YoeB (3)
YafQ
VapC (2)
PhD/YefM
RelE/ParE (2) VapC (3)
HipA
HicB
PIN
PhD/YefM
VapC 0 0

1Based on genome annotation and Mauve [80] alignment with ortholog 50% sequence identity.

2As determined using a relevant bioinformatics package, EffectiveELD [79].

3As determined according to S1 Table.