KEY RESOURCES TABLE
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| Rabbit anti-Lucifer Yellow | Life Technologies | Cat# A5750; RRID:AB_1501344 |
| Rabbit polyclonal anti-calbindin | Swant | Cat# CB38; RRID: AB_2721225 |
| Mouse monoclonal anti-calbindin | Sigma | Cat# C9848; RRID:AB_476894 |
| Goat anti-ChAT | Millipore | Cat# AB144P; RRID: AB_2079751 |
| Rabbit polyclonal anti-cone arrestin | Millipore | Cat# AB15282; RRID:AB_1163387 |
| Mouse monoclonal anti-CtBP2 | BD Bioscience | Cat# 612044; RRID:AB_399431 |
| Mouse monoclonal anti-Gephyrin | Synaptic Systems | Cat# 147 111; AB_2619837 |
| Rabbit polyclonal anti-Iba1 | Wako | Cat# 019-19741; RRID: AB_839504 |
| Lectin peanut agglutinin, Alexa Fluor 647 Conjugate | Life Technologies | Cat# L32460 |
| Mouse monoclonal anti-PKCalpha | Sigma-Aldrich | Cat# P5704; RRID:AB_477375 |
| Rabbit anti-RBPMS | Phosphosolutions | Cat# 1830; RRID: AB_2492225 |
| Rabbit polyclonal anti-Ribeye | Synaptic Systems | Cat# 192 103; RRID: AB_2086775 |
| Mouse monoclonal anti-SMI-32 | Stenberger Monoclonals | Cat# SMI-32P; RRID: AB_2314912 |
| Donkey polyclonal anti-rabbit-Alexa 488 | Jackson Immunoresearch | Cat# 711-545-152; RRID:AB_2313584 |
| Donkey polyclonal anti-sheep-Alexa 633 | Molecular Probes | Cat# A21100; RRID:AB_10374307 |
| Donkey polyclonal anti-mouse-Dylight 405 | Jackson Immunoresearch | Cat# 715-475-150; RRID:AB_2340839 |
| Donkey polyclonal anti-mouse-Alexa 647 | Jackson Immunoresearch | Cat# 715-605-151; RRID:AB_2340863 |
| Chemicals, Peptides, and Recombinant Proteins | ||
| Normal Donkey Serum | Jackson Immunoresearch | Cat# NC9624464 |
| Ames’ Medium | United States Biological | Cat# A1372-25 |
| Agarose, low gelling temperature Type VIIA | Sigma Aldrich | Cat# A0701 |
| Vectashield | Vector Laboratories | Cat# H-1000; RRID: AB_2336789 |
| Amphotericin-B | Sigma Aldrich | Cat# A9528 |
| Experimental Models: Organisms/Strains | ||
| Mouse model: C57BL/6-Gt(ROSA) 26Sortm1(HBEGF)Awai/J (DTR) | The Jackson Laboratory | Cat# JAX:007900; RRID:IMSR_JAX:007900 |
| Mouse model: B6;SJL-Pde6b+ Tg(Rho-icre)1Ck/Boc (Rho-iCre) | The Jackson Laboratory (Li et al., 2005) | Cat# JAX:015850 RRID: IMSR_JAX:015850 |
| Mouse model: B6.Cg-Gt(ROSA) 26Sortm6(CAG-ZsGreen1)Hze/J (Ai6) | The Jackson Laboratory | Cat# JAX:007906; RRID:IMSR_JAX:007906 |
| Mouse model: Grm6-tdTomato | Kerschensteiner et al., 2009 | N/A |
| Software and Algorithms | ||
| ImageJ | NIH | https://imagej.nih.gov/ij/, RRID: SCR_003070 |
| Amira | Thermo-Fisher Scientific | https://www.thermofisher.com/global/en/home/industrial/electron-microscopy/electron-microscopy-instruments-workflow-solutions/3d-visualization-analysis-software.html, RRID: SCR_014305 |
| Imaris | Bitplane | https://imaris.oxinst.com, RRID: SCR_007370 |
| MATLAB | Mathworks | https://www.mathworks.com/products/matlab.htm, RRID: SCR_001622 |
| Igor Pro | Igor Pro | RRID:SCR_000325 |
| Object Finder | Della Santina et al., 2013 | https://lucadellasantina.github.io/ObjectFinder/ |
| Symphony and Stage | Mark Cafaro and Fred Rieke | https://github.com/Symphony-DAS/symphony-v1/wiki; https://github.com/Stage-VSS/stage-v1 |