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. 2021 Mar 1;296:100492. doi: 10.1016/j.jbc.2021.100492

Table 1.

Selected distances (top) and angles (bottom) of the Av3MDO-3HPA complex (PDB accession code 6XB9) as compared with optimized DFT models of the iron active bound to 3HPA and 3MPA

Selected geometric parameters 6XB9 Fe(III) 3HPA2− Fe(III) 3HPA1− Fe(III) 3MPA Fe(II) 3HPA2− Fe(II) 3HPA1− Fe(II) 3MPA
RMSDa - 0.382 0.248 0.417 0.517 0.357 0.547
 Distance (Å)
 Fe-O/S distance (Å) 2.16 1.87 2.23 2.32 1.91 2.26 2.33
 Fe-O(carb)b (Å) 2.17 2.14 1.97 2.08 2.55 2.25 2.51
 Fe-Cl (Å) 2.36 2.36 2.28 2.36 2.60 2.38 2.47
 Fe-His(Ave) 2.16 2.18 2.13 2.20 2.17 2.15 2.19
 Fe-H90 2.15 2.17 2.17 2.19 2.18 2.16 2.20
 Fe-H92 2.16 2.20 2.08 2.21 2.18 2.11 2.22
 Fe-H142 2.16 2.17 2.13 2.19 2.16 2.19 2.15
 Angles (°)
 Fe-O/S-Cα 92.5 120.6 113.0 96.7 117.7 111.6 98.4
 H90-Fe-Cl 175.7 171.8 174.0 169.3 169.6 171.5 166.3
 H92-Fe-O/S 171.1 177.9 174.1 171.9 168.2 179.3 175.9
 O(carb)-Fe-O/S 101.1 92.1 85.1 96.4 82.6 88.6 88.8
 3HPA/3MPA C1-C2-C3 114.6 116.9 115.6 119.3 116.5 117.8 117.6

The 3HPA-inhibitor was modeled as both the protonated and deprotonated alcohol (3HPA1− and 3HPA2−) for comparison.

a

Hydrogens and all constrained atoms were excluded from RMSD calculations.

b

Fe-O(carb) designates the distance separating the Fe(III)-site from the 3HPA (or 3MPA) carboxylate O-atom.