Table 7.
An overview of relevant datasets
| Dataset | Type | # Proteins | # Interactions | # Positive to negative ratio |
|---|---|---|---|---|
| DUD-E* | Classification | 102 | 91,220 | 1: 3 |
| Human | Classification | 2488 | 13,476 | 1:3 |
| C. elegans | Classification | 2496 | 16,000 | 1:3 |
| KIBA | Classification | 229 | 118,253 | 4.7:1 |
| MUV* | Classification | 9 | 4770 | 1:16 |
| BindingDB | Classification | 466 | 5508 | 1:1 |
| PDBbind* | Regression | 13,196 | 13,196 | – |
| Davis | Regression | 442 | 9125 | – |
| CASF-2013* | Regression | 195 | 195 | – |
| Astex Diverse* | Regression | 73 | 73 | – |
Asterisk (*) indicates structure dataset
Best values are higlhlighted in bold