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. 2021 Apr 16;27(3):1729–1740. doi: 10.1007/s10989-021-10205-z

Table 4.

Population coverage analysis of optimized top scoring CTL epitopes for different target populations

Protein Target population Epitope Percentage coverage Total HLA hits

P0DTC2

Spike glycoprotein (S)

Europe RVVVLSFEL 80.55% 31
SLSSTASAL 77.12% 31
YQPYRVVVL 75.44% 24
AIVMVTIML 72.91% 18
FVFLVLLPL 68.03% 20
TSNQVAVLY 63.35% 26
YLQPRTFLL 63.31% 26
SIIAYTMSL 60.53% 33
North America RVVVLSFEL 80.83% 31
SLSSTASAL 80.83% 31
SIIAYTMSL 78.10% 33
YQPYRVVVL 74.61% 24
AIVMVTIML 69.55% 18
TSNQVAVLY 67.13% 26
VVNQNAQAL 64.63% 23
YLQPRTFLL 64.56% 26
South Asia TSNQVAVLY 80.64% 26
KTSVDCTMY 76.42% 23
VLKGVKLHY 71.64% 17
LSETKCTLK 66.63% 10
MTSCCSCLK 66.63% 10
TLLALHRSY 66.62% 13
SIIAYTMSL 65.03% 33
RVVVLSFEL 61.94% 31
North East Asia TSNQVAVLY 82.88% 26
KTSVDCTMY 81.61% 23
RVVVLSFEL 79.33% 31
VLKGVKLHY 78.68% 17
TLLALHRSY 76.97% 13
SLSSTASAL 73.78% 31
VVNQNAQAL 68.07% 23
SIIAYTMSL 66.22% 33

P0DTC9

Nucleoprotein (N)

Europe KAYNVTQAF 77.43% 27
LSPRWYFYY 63.35% 26
SPRWYFYYL 60.10% 14
FPRGQGVPI 59.75% 12
North America KAYNVTQAF 76.89% 27
LSPRWYFYY 67.13% 26
DLSPRWYFY 54% 13
SPRWYFYYL 51.20% 14
South Asia LSPRWYFYY 80.64% 26
DLSPRWYFY 72.60% 13
KAYNVTQAF 63.14% 27
SPRWYFYYL 32.99% 14
North East Asia LSPRWYFYY 82.88% 26
KAYNVTQAF 76.27% 27
DLSPRWYFY 64% 13
SPRWYFYYL 25.03% 14

P0DTD2

ORF9b protein

Europe KISEMHPAL 88.15% 38
KVYPIILRL 80.84% 20
GPKVYPIIL 60.10% 15
RLVDPQIQL 55.65% 14
North America KISEMHPAL 85.77% 38
KVYPIILRL 77.80% 20
RLVDPQIQL 55.50% 15
GPKVYPIIL 51.20% 14
South Asia KVYPIILRL 76.77% 20
KISEMHPAL 65.26% 38
GPKVYPIIL 32.99% 14
RLVDPQIQL 31.48% 15
North East Asia KVYPIILRL 81.77% 20
KISEMHPAL 81.09% 38
RLVDPQIQL 64.31% 15
SLEDKAFQL 37.92% 13