Key resources table
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| F4/80 Monoclonal Antibody (BM8) | eBioscience | Cat#17-4801-82; RRID: AB_2784648 |
| CD11b Monoclonal Antibody (M1/70) | eBioscience | Cat#RM2828; RRID: AB_10372795 |
| Anti-Mouse I-A/I-E (M5/114.15.2) | BD Biosciences | Cat#557000; RRID: AB_396546 |
| Anti-Mouse CD86 (GL1) | BD Biosciences | Cat#553692; RRID: AB_394994 |
| Anti-Mouse CD273 (TY25) | BD Biosciences | Cat#557796; RRID: AB_396874 |
| Chemicals, peptides, and recombinant proteins | ||
| Mouse IFN gamma Recombinant Protein | R&D Systems | Cat#485-MI |
| Lipopolysaccharide (LPS) Solution | Sigma-Aldrich | Cat#L8274 |
| Recombinant Mouse IL-4 Protein | R&D Systems | Cat#404-ML |
| Recombinant Mouse IL-10 Protein | R&D Systems | Cat#417-ML |
| Oxidized Low Density Lipoprotein (oxLDL) | Kalen Biomedical | Cat#770202-6 |
| Oil Red O | Sigma-Aldrich | Cat#O0625 |
| SlowFade Gold Antifade Mountant with DAPI | Invitrogen | Cat#S36938 |
| PNGase F (Glycerol-free) | New England BioLabs | Cat#P0705L |
| Sequencing Grade Modified Trypsin | Promega | Cat#V5111 |
| Sep-Pak C18 Cartridge | Waters | Cat#WAT054945 |
| GalNAc-α-Bn | Sigma-Aldrich | Cat#B4894 |
| Peanut agglutinin (PNA), Biotinylated | Vector Laboratories | Cat#B-1075 |
| Maackia amurensis lectin I (MAL-I), Biotinylated | Vector Laboratories | Cat#B-1315 |
| Erythrina cristagalli lectin (ECL), Biotinylated | Vector Laboratories | Cat#B-1145 |
| Concanavalin A (ConA), Biotinylated | Vector Laboratories | Cat#B-1005 |
| Aleuria aurantia lectin (AAL), Biotinylated | Vector Laboratories | Cat#B-1395 |
| Ulex europaeus agglutinin I (UEA-I), Biotinylated | Vector Laboratories | Cat#B-1065 |
| Lycopersicon esculentum lectin (LEL), Biotinylated | Vector Laboratories | Cat#B-1175 |
| Phaseolus vulgaris erythroagglutinin (E-PHA), Biotinylated | Vector Laboratories | Cat#B-1125 |
| Phaseolus vulgaris leucoagglutinin (L-PHA), Biotinylated | Vector Laboratories | Cat#B-1115 |
| Maackia amurensis lectin II (MAL-II), Biotinylated | Vector Laboratories | Cat#B-1265 |
| Sambucus nigra lectin (SNA), Biotinylated | Vector Laboratories | Cat#B-1305 |
| Neuraminidase | Roche | Cat#10269611001 |
| Streptavidin-PE | eBioscience | Cat#12-4317-87 |
| RNeasy Plus Mini RNA Isolation Kit | Qiagen | Cat#74134 |
| RNase-free DNase | Ambion | Cat#AM2222 |
| SuperScript III First-Strand Synthesis System | Invitrogen | Cat#18080051 |
| UltraPure DEPC-treated Water | Invitrogen | Cat#750024 |
| iQ SYBR Green Supermix | BioRad | Cat#1708880 |
| ProteoMass Peptide and Protein MALDI-MS Calibration Standard | Supelco | Cat#MSCAL1 |
| Experimental models: organisms/strains | ||
| C57BL/6 | The Jackson Laboratory | JAX: 000664 |
| Software and algorithms | ||
| Prism 6.0 | GraphPad | https://www.graphpad.com/scientific-software/prism/ |
| GlycoWorkbench 1.1 | Ceroni et al., 2008 | https://code.google.com/archive/p/glycoworkbench/ |
| mMass 5.5.0 | Strohalm et al., 2010 | http://www.mmass.org |
| flexControl 3.4 | Bruker | Part#282595 |
| flexAnalysis 3.4 | Bruker | Part#282592 |
| MetaboAnalyst 4.0 | Chong et al., 2018 | https://www.metaboanalyst.ca |
| NetworkAnalyst 3.0 | Zhou et al., 2019 | https://www.networkanalyst.ca |