Table 1.

Overview of data files/data sets

Label	Name of data file/data set	File types (file extension)	Data repository and identifier (DOI or accession number)
Additional file 1	Methods	PDF file (.pdf)	Figshare https://doi.org/10.6084/m9.figshare.13604102.v3 [18]
Data file 1	Taxonomic sampling	Image file (.png)	Figshare https://doi.org/10.6084/m9.figshare.13603511.v1 [19]
Data set 1	Proteome set description	Text files (.csv,.html)	Figshare https://doi.org/10.6084/m9.figshare.13113893.v1 [20]
Data set 2	Proteome files	FASTA files (.tar.gz)	Figshare https://doi.org/10.6084/m9.figshare.13573424.v2 [21]
Data file 2	BUSCO report	Text file (.csv)	Figshare https://doi.org/10.6084/m9.figshare.13235045.v1 [22]
Data set 3	Forty-Two reports and configuration files	Text files (.tsv,.csv,.yaml)	Figshare https://doi.org/10.6084/m9.figshare.13235063.v3 [23]
Data file 3	Orthogroup properties	Image file (.pdf)	Figshare https://doi.org/10.6084/m9.figshare.13312622.v1 [24]
Data set 4	Orthogroups	FASTA files, YAML configuration file (.tar.gz)	Figshare https://doi.org/10.6084/m9.figshare.13573658.v3 [25]
Data set 5	Clans	FASTA files (.tar.gz)	Figshare https://doi.org/10.6084/m9.figshare.13573415.v1 [26]
Data file 4	Organelle database	Text file (.tsv)	Figshare https://doi.org/10.6084/m9.figshare.13246841.v1 [27]
Data file 5	Plastid-targeted proteins	Spreadsheet (.xlsx)	Figshare https://doi.org/10.6084/m9.figshare.13246784.v1 [28]
Data file 6	eggNOG OG annotations	Text file (.tsv)	Figshare https://doi.org/10.6084/m9.figshare.13415048.v1 [29]
Data file 7	eggNOG clan annotations	Text file (.tsv)	Figshare https://doi.org/10.6084/m9.figshare.13415060.v1 [30]