Preparation Optimization of Bovine Serum Albumin Nanoparticles and Its Application for siRNA Delivery

Yifan Wang; Si Chen; Xin Yang; Shuang Zhang; Chunying Cui

doi:10.2147/DDDT.S299479

. 2021 Apr 14;15:1531–1547. doi: 10.2147/DDDT.S299479

Preparation Optimization of Bovine Serum Albumin Nanoparticles and Its Application for siRNA Delivery

Yifan Wang ^1,^2,³, Si Chen ^1,^2,³, Xin Yang ^1,^2,³, Shuang Zhang ^1,^2,³, Chunying Cui ^1,^2,^3,^✉

PMCID: PMC8053787 PMID: 33883877

Abstract

Background

siRNA brings hope for cancer therapy. However, there are many obstacles for application of siRNA in clinical. Because of the excellent biocompatibility, non-toxicity and non-immunogenicity of bovine serum albumin (BSA), BSA-based nanoparticles have been widely designed as a drug carrier system.

Methods

The optimal formula for BSA NPs preparation was investigated by central composite design response surface methodology (CCD-RSM), BSA-based survivin-siRNA delivery system (BSA NPs/siRNA) was characterized by dynamic light scattering, atomic force microscope, transmission electron microscope and Bradford method. The in vitro anti-tumor effect and mechanism of BSA NPs were investigated by confocal microscopic imaging, MTT assay, RT-qPCR and ELISA analysis. Moreover, the anti-tumor effect, distribution and biosafety of BSA NPs were studied in vivo.

Results

The optimal formula for BSA NPs was settled to be 20 mg/mL for BSA concentration, 9 for pH value, 136% for crosslinking degree and 1.6 mL/min for speed of ethanol addition. BSA NPs/siRNA could remain stable at 4°C for 4 weeks and protect siRNA from degradation by RNase A. Besides, BSA NPs/siRNA could maintain a sustained release of siRNA and promote the uptake of siRNA significantly. The survivin-mRNA level and the survivin-protein level were decreased by 55% ± 1.6% and 54% ± 1.6% separately. The in vivo tumor inhibition results suggested that the tumor inhibition rate of BSA NPs/siRNA-treated group was 54% ± 12% and was similar with that of DOX-treated group (57% ± 9.2%, P > 0.05). The biosafety results confirmed that BSA NPs/siRNA could not induce significant damages to the main organs and blood in vivo.

Conclusion

These results demonstrated that CCD-RSM was an effective tool for preparation analysis, and the BSA NPs/siRNA was a promising system for siRNA-based gene therapy.

Keywords: bovine serum albumin, BSA, CCD-RSM, survivin-siRNA, nanoparticles, RNAi

Introduction

RNA interference (RNAi) has attracted a broad attention since its discovery in the 1990s.1 Oligonucleotides, such as small interfering RNAs (siRNAs), are promising drug modality for a variety of diseases.2 As a 21–23 bp double-stranded RNA molecule, siRNAs could induce a sequence-specific posttranscriptional gene silencing by targeting complementary nucleotide sequence.3 However, there are still many obstacles for application of siRNAs in clinical.4 The large molecular and negative charge will promote the renal clearance, and prevent the cellular transmembrane of siRNAs after administration.5 Moreover, siRNAs are easy to be degraded during blood circulation, and will cause serious immune response in vivo.6 So it has great significance to design a siRNA delivery system with excellent transfection effect and good biocompatibility.7 Survivin gene is a member of the inhibitor of apoptosis protein family, which has the ability to inhibit cell apoptosis and regulate cell division. The expression of Survivin gene has highly tumor specificity, making it an ideal target for tumor gene therapy. According to previous research, inhibition of Survivin gene was an effective method for treatment of various tumors.8–10

Bovine serum albumin (BSA) is an endogenous biomacromolecule, and has been widely used as a material for drug delivery.11,12 Compared to other carrier materials, BSA has many advantages, such as biodegradability, non-toxicity, and non-immunogenicity.13,14 Moreover, BSA has a dual targeting ability to tumor tissues. As reported, BSA could bind with albumin receptor gp60 and the cysteine rich acidic secretory protein (SPARC), both of which are highly expressed in tumor tissues.15 Considering the remarkable characters of BSA, it has broadly applied for delivering of chemical drugs, gene drugs, antibodies and so on.16 It is reported that BSA nanoparticles could encapsulate genes by the abundant positive amino acids in BSA.17 Although BSA has been investigated as a drug delivery carrier in a lot of researches, few study was carried out to optimize the preparation condition of BSA nanoparticles.

Central composite design response surface methodology (CCD-RSM) is an effective method for multi-factor experimental analysis, and is frequently applied for prescription optimization in the field of pharmacy.18 Compared with other factor analysis methods, CCD-RSM is more accurate and convenient.19 So it is usually adopted to investigate the influence of multiple factors on the results of pharmaceutical preparation.20–22

In this research, CCD-RSM was carried out to optimal the prescription of BSA NPs, and the optimal formula was applied to prepare survivin-siRNA loaded BSA NPs (BSA NPs/siRNA). As shown in Figure 1, BSA NPs could not only protect survivin-siRNA from degradation but also enhance the gene silencing effect of survivin-siRNA by cellular-uptake promoting effect and targeting effect of BSA. As an inhibitor of apoptosis protein family highly expressed in tumor, silencing of survivin gene would exert an efficient anti-tumor effect. It is highly expected that the BSA NPs are a promising carrier for targeted gene delivery, and have a huge application potential for RNAi therapy.

The mechanism of BSA NPs/siRNA preparation and anti-tumor effect. BSA NPs/siRNA were prepared by desolvation-crosslinking method. BSA NPs/siRNA could target survivin-siRNA into tumor tissues, and promote the cellular uptake of survivin-siRNA. The gene silencing effect of survivin-siRNA was significantly enhanced after loaded in BSA NPs.

Materials and Methods

Materials

Bovine Serum Albumin, Glutaraldehyde solution (50 wt % in H2O) and Proteinase K were purchased from Sigma-Aldrich (St. Louis, MO, USA). Survivin-siRNA, Cy3-survivin-siRNA and Cy5-survivin-siRNA were purchased from GL Biochem Ltd. (Shanghai, China). LipoTM2000 (Lipo), TRIzol and Hoechst 33342 were purchased from Invitrogen (Carlsbad, CA, USA). TaqMan^® Gene Expression Master Mix, High Capacity RNA-to-cDNA Kit, High Capacity cDNA Reverse Transcription Kit, Human Survivin Quantikine ELISA Kit and TaqMan^® Gene Expression Assays were obtained from Thermo Fisher Scientific (Waltham, MA, USA). MCF-7 cell line was purchased from the Cell Bank of Chinese Academy of Medical Sciences. MCF-7 cells were cultured in RPMI-1640 medium (Hyclone Laboratories Inc., Logan, USA) with 10% Fetal bovine serum (Gibco, Australia). The cells were detached with 0.25% Trypsin (Hyclone, USA). All reagents were analytical grade and deionized water was used in all experiments.

The sequences of homo-survivin-siRNA are 5ʹ-CACCGCAUCUCUCUACAUUC ATT-3ʹ (sense) and 5ʹ-UGAAUGUAGAGAGAUGCGGUGTT-3ʹ (anti-sense). The sequences of mus-survivin-siRNA are 5ʹ-CCGAGAACGAGCCUGAUUUTT-3ʹ (sense) and 5ʹ-AAAUCAGGCUCGUUCUCGGTT-3ʹ (anti-sense). The sequences of NC (negative control) are 5ʹ-UUCUCCGAACGUGUCACGUTT-3ʹ (sense),5ʹ-ACGUGACACGUUCGGAGAATT −3ʹ (anti-sense).

Preparation and Formulation Optimization of BSA NPs

Bovine serum albumin nanoparticles (BSA NPs) were prepared by desolvation-crosslinking method.23–25 Firstly, bovine serum albumin (BSA, 50 mg) was dissolved in NaCl (2 mL, 10 mM) solution, and stirred for 15 minutes at room temperature. The pH of BSA solution was adjusted to 8.0, and ethanol was added dropwise (1 mL/min) until the solution appearing light blue opalescent. The nanoparticles solution was stirred for 3 h at room temperature, and then glutaraldehyde aqueous solution (20 μL, 8%) was added to obtain BSA NPs. After stirring for 24 h at room temperature, the nanoparticles suspension was purified by centrifugation (12000 ×g, 30 min) for three times.

Six basic factors related to the preparation of BSA NPs were investigated by variable-controlling approach. That is BSA concentration, pH value, glutaraldehyde concentration, volume of ethanol, speed of ethanol addition and stirring rate. The hydrodynamic diameter and polydispersity index (PDI) were measured to evaluate the effects of the factors.

Then four factors that significantly influenced the preparation of BSA NPs were selected. That is BSA concentration, pH value, glutaraldehyde concentration and speed of ethanol addition. For each factor, five levels were designed. And total of 30 groups were carried out to optimize the preparation of BSA NPs. Hydrodynamic diameter, PDI and zeta potential were applied as evaluation indexes. The results were analyzed by central composite design (CCD) response surface methodology, and calculated by Design Expert.26

Preparation of BSA NPs/siRNA

The optimal formulation obtained above was used to prepare BSA NPs/siRNA. Twenty-milligram BSA was dissolved in NaCl solution (1 mL, 10 mM), and was stirred for 15 minutes at room temperature. Survivin-siRNA (1.2 nmoL) was added to BSA solution, and stirred for 1 h at room temperature. The pH of the solution was adjusted to 9.0, and ethanol was added dropwise (1 mL/min) until the solution appearing light blue opalescent. The nanoparticles solution was stirred for 3 h at room temperature, and then glutaraldehyde aqueous solution (16 μL, 8%) was added to obtain BSA NPs. After stirring for 24 h at room temperature, the nanoparticles suspension was purified by centrifugation (12000 ×g, 30 min) for three times. The precipitate was resuspended in deionized water solution.

Characterization of BSA NPs and BSA NPs/siRNA

The hydrodynamic diameter, PDI and zeta potential of BSA NPs/siRNA were measured by dynamic light scattering (DLS, Nano ZS90, Malvern Panalytical, UK). Surface morphology of the nanoparticles was observed by atomic force microscope (AFM, Veeco Instruments Inc., Plainview, NY, USA) and transmission electron microscope (TEM, JEOL, Tokyo, Japan).

Nanoparticles Yield and Survivin-siRNA Loading

The yield of BSA NPs was measured by Bradford method.27 After preparation by desolvation-crosslinking method, BSA NPs solution was centrifuged by 12000 ×g, and the supernatant was obtained. The total protein for preparation of BSA NPs (Total protein) and the protein in supernatant (Protein in supernatant) were tested by coomassie brilliant blue (CBB). And the nanoparticle yield was calculated as follows:

The amount of survivin-siRNA loaded in BSA NPs/siRNA was determined by electrophoresis (CZE, MDQ, Beckman).28 BSA NPs/siRNA were centrifuged by 12000 ×g, and the supernatant was obtained. The amount of survivin-siRNA in the supernatant was measured as the following experimental parameters: the fused-silica capillary with effective length of 40 cm and inner diameter of 50 μm, 30 kV for potential, temperature 30°C, 12.5 mM of borate buffer, pH 9.5, 260 nm for the wave length of the diode-array detector. And the survivin-siRNA loading capacity of BSA NPs/siRNA was calculated as follows:

Release Profile of BSA NPs/siRNA

Release profile of siRNA from BSA NPs/siRNA was measured by dialysis. FAM labelled survivin-siRNA were used. Naked siRNA and BSA NPs/siRNA (500 μL, 100 nM) were dispersed in 500μL PBS solution (pH 7.4), and placed into dialysis membranes (MWCO: 8–14 kD) respectively. The dialysis was conducted in 5mL PBS solution at 37°C. The 5mL PBS dialysis solution was collected and replaced with fresh dialysis solution at 1 h, 2 h, 5 h, 10 h, 24 h, 36 h, 48 h, 60 h, 72 h, 96 h, 120 h, 144 h, respectively. The amount of survivin-siRNA was measured by fluorescence spectrophotometer (F-2500, HITACH, Japan, 492 nm for excitation, 518 nm for emission), and the cumulative release of survivin-siRNA was calculated.

Stability of BSA NPs/siRNA

BSA NPs/siRNA were placed at 4°C for 4 weeks. And the hydrodynamic diameter and PDI were measured once every week to evaluate the storage stability of BSA NPs/siRNA.

The enzymatic stability of BSA NPs/siRNA was evaluated by agarose gel retardation assay. BSA NPs/siRNA and survivin-siRNA were treated with RNAse (10 µg/mL) separately for 0.5, 1 and 2 h at 37°C. And then Proteinase K (100 µg/mL) was applied to release survivin-siRNA from BSA NPs/siRNA. The supernatant was collected for determination. The survivin-siRNA levels in all samples were measured by agarose gel retardation assay.29

Cell Culture

MCF-7 human breast tumor cells were cultured in RPMI 1640 medium supplemented with 10% FBS, penicillin (100 U/mL) and streptomycin (100 μg/mL) at 37°C with 5% CO2. The cells were subcultured 2–3 times a week till they reached 80% confluence.

Cellular Uptake

Cy3-labelled survivin-siRNA (Cy3-siRNA) was applied to observe the location of siRNA in cells. MCF-7 cells were seeded in 20 mm confocal dishes at a density of 2×10⁵ cells/mL. Then, the cells were treated with Cy3-siRNA (100 nM), BSA NPs/Cy3-siRNA (contain 100 nM Cy3-siRNA) and Lipo/Cy3-siRNA (contain 100 nM Cy3-siRNA) separately. After transfection for 4 h, the medium in each dishes was removed. And then Hoechst 33342 (4 μg/mL) was added. After incubation for another 15 minutes, the staining solution was discarded and the cells were washed with PBS solution for 3 times. The cellular uptake results were observed by a confocal laser scanning microscopy (CLSM, TCSSP5, Leica, Wetzlar, Germany).30

MTT Assay

MTT assay was used to evaluate the cytotoxicity of BSA NPs and the proliferation inhibition effect of BSA NPs/siRNA.31 MCF-7 cells (5×10³ cells/well) were seeded in a 96-well plate and incubated for 24 h. For cytotoxicity assay of BSA NPs, the cells were treated with 100 μL BSA NPs with different concentrations (0.1, 0.2, 0.4, 0.6, 0.8, 1.0, 2.0, 4.0 mg/mL). For anti-proliferation assay of BSA NPs/siRNA, the cells were treated respectively with siRNA, Lipo/NC, BSA NPs/NC, Lipo/siRNA and BSA NPs/siRNA (contain 30, 60, 90 and 120 nM siRNA). All cells were incubated for 48 h at 37°C with 5% CO₂. Then, 25 μL MTT solution (5 mg/mL) was added into each well, and cells were incubated for another 4 h. Then the medium was removed, and DMSO solution (150 μL) was added. The absorbance was measured at 570 nm by a microplate reader (EnSpire, PerkinElmer Inc., Waltham, MA, USA).

RT-qPCR

The expression of survivin-mRNA was measured by RT-qPCR.32 MCF-7 cells were seed in six-well dishes at the density of 2×10⁵ cells/well for 12h. After washing 2 times with PBS, the cells were treated with 100 nM of siRNA, Lipo/NC, BSA NPs/NC, Lipo/siRNA and BSA NPs/siRNA separately for 6 h. Then the solution in dishes was replaced by completed medium, and the cells were incubated for another 42 h. TRIzol reagent was applied to exact the total RNA. GeneAmp^® PCR System 9700 (Applied Biosystems, USA) and Real-Time PCR System 7500 (Applied Biosystems, USA) were separately used to reverse RNA to cDNA and amplify the expression of cDNA. NanoDrop Spectrophotometer (ND-1000, Thermo Scientific, USA) was applied for the measure of concentration of RNA and cDNA. The value relative quantity of survivin-mRNA expression was calculated with average threshold cycle (Ct) by the delta-delta Ct (2^−ΔΔCt) method.

ELISA

The expression of survivin protein was measured by ELISA.33 MCF-7 cells were seed in six-well dishes at the density of 2×10⁵ cells/well for 12h. After washing 2 times with PBS, the cells were treated with 100 nM of siRNA, Lipo/NC, BSA NPs/NC, Lipo/siRNA and BSA NPs/siRNA separately for 6 h. Then the solution in dishes was replaced by completed medium, and the cells were incubated for another 42 h. The total protein was obtained by a protein extraction solution (RIPA/PMSF/Cocktail=100/1/1). The concentration of cell protein was measured by a BCA Protein Assay kit, and the amount of survivin-protein was measured by a Human Survivin ELISA kit according to the instructions. Plates were read at 450 nm by a microplate reader to measure the optical density (OD) values.

Tumor Inhibition of BSA NPs/siRNA in vivo

Female BALB/c nude mice (four weeks, 13–15 g) were obtained from Animal Department of Capital Medical University and raised at SPF environment (temperature: 22–25°C, humidity: 50 ± 2.0%). All of the animal experiments were approved by the Institutional Animal Ethics Committee of Capital Medical University, and the welfare of the laboratory animals was “The Laboratory Animal-Guideline for Ethical Review of Animal Welfare issued by the National Standard GB/T 35892–2018 of the People’s Republic of China”.

The mice were intraperitoneally injected with 0.2 mL estrogen (0.75 mg/mL) every three days. After two weeks, MCF-7 cells (1×10⁷ cells/mouse) were subcutaneously injected into the axilla of mice to establish breast cancer xenografts. When the tumor volume (volume (mm³) = length × width²/2) reached approximately 150 mm³, all the nude mice were randomly divided into four groups with 6 mice in each group. Each group was intravenously injected with normal saline (Control), 0.3 mg/kg survivin-siRNA (siRNA), BSA NPs/siRNA (contain 0.3 mg/kg survivin-siRNA) and 1.2 mg/kg DOX respectively every other day for 5 times. The tumor volume of the nude mice were recorded every other day. On the day after the last injection, all nude mice were weighted and sacrificed. The tumor of each mice was collected and photographed. And the main organs (heart, liver, spleen, kidney and brain) were also harvested to study organ toxicity of BSA NPs/siRNA.34

Distribution of BSA NPs/siRNA in vivo

Breast cancer xenografts BALB/c nude mice were randomly divided into three groups. Each group was intravenously injected with normal saline (Control), 0.3 mg/kg Cy5-survivin-siRNA (siRNA) and BSA NPs/siRNA (contain 0.3 mg/kg Cy5-survivin-siRNA) respectively. The fluorescence imaging of the nude mice were photographed at 0.5, 4 and 8 h by an in vivo fluorescence imaging system (IVIS Spectrum, PerkinElmer Inc., Waltham, MA, USA).

Blood Biochemistry Analysis

BALB/c nude mice (6 weeks old, female, about 15 g) were divided into four groups (n=5): normal saline group (control), naked survivin-siRNA group (siRNA, 0.3 mg/kg), BSA NPs/siRNA group (contain 0.3 mg/kg siRNA), and DOX group (1.2 mg/kg). After drug administration every other day for 5 times, blood samples were taken from each nude mouse. The complete blood panel data was measured by an automatic hematology analyzer (MEK6400, Nihon Kohden, Japan). And the main blood biochemical indicators were detected by an automatic biochemical analyzer (BS-350E, Mindray, China).35

Statistics Analysis

Data was expressed as mean ± SD (standard deviation) based on at least three times experiments. t-test was used for statistical analysis.

Results

Investigation of Prescription Optimization

Six factors in preparation of BSA NPs were investigated in this research. As shown in Figure 2, BSA concentration, pH value, ethanol volume, speed of ethanol addition and glutaraldehyde volume were the most significant factors for BSA NPs preparation. Since ethanol volume is related to the other factors, it is not suitable for multi-factor experimental analysis. So the multi-factor experiments were designed based on the other four factors (BSA concentrations, pH values, speed of ethanol addition and glutaraldehyde volume). Five levels of the four factors were designed through CCD-response surface methodology, and total of 30 assays were generated by Design Expert (Table 1). The experimental results suggested that BSA concentration and pH value were the most important factors for BSA NPs preparations. So the response surface plots for hydrodynamic diameter (Figure 3A), polydispersity index (Figure 3B) and zeta potential (Figure 3C) were investigated to study the interaction between BSA concentration and pH value, as well as got the optimal BSA concentration and pH value for BSA NPs preparation. The results suggested that BSA NPs had the best character when BSA concentration was 20 mg/mL and pH value was 9. So, according to the analysis above, the optimal formula for BSA NPs preparation was settled to be 20 mg/mL for BSA concentration, 9 for pH value, 136% for crosslinking degree and 1.6mL/min for speed of ethanol addition.

Diameter and PDI of BSA NPs prepared by different BSA concentrations (A), pH values (B), ethanol volume (C), speed of ethanol addition (D), speed of stirring rate (E), glutaraldehyde concentrations (F).

Table 1.

The Experiments Designed by CCD-RSM

Factors	Symbol	Coded Levels
Factors	Symbol	−2	−1	0	1	2
BSA concentration/mg/mL	X1	7.5	15.0	22.5	30.0	37.5
pH value	X2	6.5	7.5	8.5	9.5	10.5
Glutaradehyde concentration/%	X3	25	75	130	175	225
Speed of ethanol addition/mL/min	X4	0.5	1.0	1.5	2.0	2.5

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Notes: Four main factors (BSA concentration, pH value, speed of ethanol addition and glutaraldehyde volume) were investigated; five levels were designed for each factor.

Response surface plots for diameter (A), PDI (B), zeta potential (C), and the plots indicated the interaction between X1 and X2. X1: BSA concentration (mg/mL), X2: pH value.

The optimal formula was applied for the preparation of BSA NPs. And the diameter of BSA NPs prepared was 161.8 ± 5.6 nm, the PDI was 0.084 ± 0.004, and the zeta potential was −34.10 ± 2.5 mV. The measured values had no significant difference with the predicted ones (147.2 nm for diameter, 0.099 for PDI and −36.17 mV for zeta potential), which proved that the mathematical model established by this method had a good predictability.

Nanoparticle Characterization

According to the optimal formula obtained above, BSA NPs/siRNA was preparation. The nanoparticles yield was calculated to be 93.1% ± 0.6%, and the survivin-siRNA loading efficiency of BSA NPs/siRNA was 0.85 ± 0.10 μg/mg. The hydrodynamic diameter and zeta potential of BSA NPs/siRNA were characterized by DLS. As shown in Figure 4A, the hydrodynamic diameter of BSA NPs/siRNA was 133.4 ± 2.6 nm, which was smaller than that of BSA NPs (161.8 ± 2.2 nm). And the zeta potential of BSA NPs/siRNA was −46.40 ± 1.8 mV, which was more negative than that of BSA NPs (−34.10 ± 1.3 mV).The potential mechanism for this phenomenon is as follows. siRNA may influence and compress the structure of BSA NPs, which makes the hydrodynamic diameter smaller,36 and the charge of siRNA is more negative when compared with BSA NPs, which makes the zeta potential of BSA NPs much more negative.24 The morphology of BSA NPs/siRNA was observed by AFM and TEM. As shown in Figure 4B and C, BSA NPs/siRNA had a spherical shape, and the size of BSA NPs/siRNA was uniformly distributed.

Characteristics of BSA NPs and BSA NPs/siRNA. (A) The schematic diagram, hydrodynamic diameter and zeta potential for BSA NPs and BSA NPs/siRNA preparation, (B) AFM images of BSA NPs/siRNA, and (C) TEM image of BSA NPs/siRNA.

Nanoparticles Stability

The storage stability of BSA NPs was studied at 4°C for 4 weeks. As shown in Figure 5A, the hydrodynamic diameter and polydispersity index of BSA NPs would not change greatly during the observation, which may attribute to the uniform particle size and negative zeta potential of BSA NPs/siRNA. As shown in Figure 5C, the Tyndall effect of water, BSA NPs and BSA NPs/siRNA was observed.

(A) Storage stability of BSA NPs at 4°C for 4 weeks, which was characterized by diameter and PDI of BSA NPs. (B) The release of survivin-siRNA from naked siRNA and BSA NPs/siRNA. (C) The Tyndall effect of water, BSA NPs and BSA NPs/siRNA was observed. (D) The degradation of naked siRNA and BSA NPs protected siRNA by RNase A, which were characterized by agarose gel retardation assay. The data were presented as the mean ± SD, n = 3.

Degradation of siRNA by RNase in vivo is one of the biggest barriers for application of siRNA in clinical.37 So the gel retardation assay was applied to evaluate the protective effect of BSA NPs on siRNA degradation. As shown in Figure 5D, the gel strip of naked survivin-siRNA disappeared completely within 0.5 h. However, there was no attenuation for the strips of BSA NPs/siRNA even after 2 h. The results proved that BSA NPs could effectively protect siRNA from degradation by RNase A.