KEY RESOURCES TABLE.
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Polyclonal anti-HspQ | This study | N/A |
Polyclonal anti-DnaA | (Sutton and Kaguni, 1995) | PMID: 7592447 |
Goat anti-Rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa 680 | Invitrogen | A-21076 |
Bacterial Strains | ||
Y. pestis KIM5–3001 (parent) | (Jackson et al., 2004) | PMID: 15554975 |
Y. pestis KIM5–3001 Δlon | (Jackson et al., 2004) | PMID: 15554975 |
dnaA508 tnaA::Tn10 | (Hinds and Sandler, 2004) | PMID: 15588282 |
dnaA508 tnaA::Tn10 lon::kan | This study | N/A |
BL21(DE3) Star™ | Invitrogen | C601003 |
Chemicals, Peptides, and Recombinant Proteins | ||
NADH, disodium salt | Roche | 10107735001 |
Pyruvate Kinase from rabbit muscle | Sigma | P9136 |
Lactate Dehygrogenase, from rabbit muscle | Calbiochem | 427217 |
Creatine Kinase from rabbit muscle | Roche | 10736988001 |
Adenosine-5′triphosphate (ATP) | Roche | 10127531001 |
Creatine Phosphate | Roche | 10621722001 |
Phosphoenolpyruvate potassium salt | Bachem | 4014027.0005 |
Oligonucleotides | ||
hspQYP105 (Forward): 5′-gagcatatgatcgccagcaaattcggtatag-3′ hspQYP105 (Reverse): 5′-caggagctcttagttacgtaggtgcggagcc-3′ |
This study | N/A |
ymoA (Forward): 5′-tgtacatatgacaaaaactgactacc-3′ ymoA (Reverse): 5′-agaggatccttatttcacatgttgccatac-3′ |
This study | N/A |
y2853 (Forward): 5′-tacttccaatccaatgcaatggattcactcatcgtccctg-3′ y2853 (Reverse): 5′ttatccacttccaatgttattaatgaatgatggggtaagaggtgg-3′ |
This study | N/A |
hspQEC (Forward): 5′-gtgcatatgattgccagcaaattcggtatc-3′ hspQEC (Reverse): 5′-gttgagctcttagttacgcagacgcgggg-3′ |
This study | N/A |
hspQ95 (Top): 5′-gatgaactggcggcctcgattcgctaacagttacaggctccgcacctacg-3′ hspQ95 (Bottom): 5′-cgtaggtgcggagcctgtaactgttagcgaatcgaggccgccagttcatc-3’ |
This study | N/A |
hspQDD (Top): 5′-ccagttacaggctccgcacctagatgactaagagctccgtcgacaagc-3′ hspQDD (Bottom): 5′-gcttgtcgacggagctcttagtcatctaggtgcggagcctgtaactgg-3 |
This study | N/A |
hspQK5D (Top): 5′-ggcagccatatgatcgccagcgatttcggtataggccagcagg-3′ hspQK5D (Bottom): 5′-cctgctggcctataccgaaatcgctggcgatcatatggctgcc-3′ |
This study | N/A |
hspQK5E (Top): 5′-ggcagccatatgatcgccagcgaattcggtataggccagcagg-3′ hspQK5E (Bottom): 5′-cctgctggcctataccgaattcgctggcgatcatatggctgcc-3′ |
This study | N/A |
hspQK5R (Top): 5′-ggcagccatatgatcgccagccgtttcggtataggccagcagg-3′ hspQK5R (Bottom): 5′-cctgctggcctataccgaaacggctggcgatcatatggctgcc-3′ |
This study | N/A |
hspQD25N (Top): 5′-cgggtatttgggagtggtgattaatatcgatcctgaatattctcttgc-3′ hspQD25N (Bottom): 5′-gcaagagaatattcaggatcgatattaatcaccactcccaaatacccg-3′ |
This study | N/A |
hspQD27N (Top): 5′-gggagtggtgattgatatcaatcctgaatattctcttgcacc-3′ hspQD27N (Bottom): 5′-ggtgcaagagaatattcaggattgatatcaatcaccactccc-3′ |
This study | N/A |
hspQS93A (Top): 5′-ccttcattagatgaactggcggccgcgattcgccaccagttacaggctcc-3′ hspQS93A(Bottom): 5′-ggagcctgtaactggtggcgaatcgcggccgccagttcatctaatgaagg-3′ |
This study | N/A |
hspQRHQ/AAA (Top): 5′-gatgaactggcggcctcgattgccgccgcgttac-3′ hspQRHQ/AAA (Bottom): 3′-gttacgtaggtgcggagcctgtaacgcggcggcaatc-5′ |
This study | N/A |
hspQext (Top): 5′-caaccttcattagatgaactggcggcctcgattcgcggcagcaccggcagcaccggcagc-3′ hspQext (Bottom): 3′-ctcttagttacgtaggtgcggagcctgtaactggtggctgccggtgctgccggtgctgcc-5′ |
This study | N/A |
Recombinant DNA | ||
pET28b-hspQEC | This study | N/A |
pET28b-hspQYP | This study | N/A |
pET28b-hspQ95 | This study | N/A |
pET28b-hspQDD | This study | N/A |
pET28b- hspQK5D | This study | N/A |
pET28b- hspQK5E | This study | N/A |
pET28b- hspQK5R | This study | N/A |
pET28b- hspQD25N | This study | N/A |
pET28b- hspQD27N | This study | N/A |
pET28b- hspQS93A | This study | N/A |
pET28b- hspQRHQ/AAA | This study | N/A |
pET28b- hspQext | This study | N/A |
pET28b-ymoA | This study | N/A |
pET28b-lonYP | This study | N/A |
pET28b-lonEC | This study | N/A |
2BT- hspQY10 | This study | N/A |
2BT- hspQY20 | This study | N/A |
2BT-y2853 | This study | N/A |
2BT-y2853150 | This study | N/A |
2BT-y2853DD | This study | N/A |
pDEST17- rsuA | This study | N/A |
pDEST17- crp | This study | N/A |
pDEST17- y0390 | This study | N/A |
pDEST17- fur | This study | N/A |
2BT-cp60Y20 | This study | N/A |
2BT-cp6-Sul20 | This study | N/A |
Software and Algorithms | ||
GraphPad Prism for data organization, analysis, and presentation | GraphPad Software | https://www.graphpad.com/scientific-software/prism/ |
Imagestudio™ for densitometry | LI-COR Biosciences | https://www.licor.com/bio/products/software/image_studio/ |
Canvas™ Draw 3 for Mac for creation of technical illustrations | ACD Systems | http://www.canvasgfx.com/en/products/canvasdraw |