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. 2021 Apr 19;13:61. doi: 10.1186/s13073-021-00858-2

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — Main display of a Pathogenwatch collection, showing a phylogenetic tree, a map and a table of SNPs associated with AMR of 395 N. gonorrhoeae genomes from a global study [65, 112]. Isolates carrying three mosaic penA marker mutations are marked in red in the tree and the map. The table can be switched to show the metadata, a timeline, typing results (multi-locus sequence typing, MLST; N. gonorrhoeae sequence typing for antimicrobial resistance, NG-STAR and N. gonorrhoeae multi-antigen sequence typing, NG-MAST) and AMR analytics (known genetic mechanisms and genotypic AMR prediction) implemented in the platform. Further detail is shown in Additional file 3: Fig. S1. The contents of and boundaries in the map are the sole responsibility of Pathogenwatch and do not necessarily reflect the views or opinions of WHO or other Public Health Agency