. 2021 Apr 20;22:285. doi: 10.1186/s12864-021-07577-3

Table 1.

Numbers of genes with B73 and Mo17 positively acting cis regulatory alleles using B73 and Mo17 reference genomes revealed read mapping preferences for reference alleles

	B73 reference^a	Mo17 reference^b
Total cis-eQTL^c	9306	7985
B73 positive cis-eQTL	6341 (68.1%)	2816 (35.3%)
Mo17 positive cis-eQTL	2965 (31.9%)	5169 (64.7%)

RNA-seq were mapped to the B73^a or Mo17^b reference using STAR with the default criteria as given in Supplemental Information.

^c The numbers of genes with cis-eQTL were recorded excluding genes with both cis and trans eQTL