Table 1.
Summary of genome assemblies.
| Strain | DTU | Size* (Mb) | GC (%) | N50 | Max. contig | Min. contig | Mean contig | Contigs | Coverage | Method | Reference or accession |
|---|---|---|---|---|---|---|---|---|---|---|---|
| SC43cl1.1 | TcV | 79.91 | 51.7 | 267 750 | 1303 015 | 325 | 64 697 | 1235 | 180 | Alumina | This study |
| TCC | TcVI | 86.77 | 51.7 | 265 169 | 1305 230 | 888 | 70 380 | 1237 | 60 | PacBio | Berna et al. 2018 |
| Tula cl2 | TcVI | 83.51 | 50.6 | 7772 | 242 476 | 200 | 1826 | 45 711 | 50 | 454 | GCA_000365225 |
| Dm28c | TcI | 53.27 | 51.6 | 317 638 | 1645 565 | 911 | 83 632 | 637 | 76 | PacBio | Berna et al. 2018 |
| Esmeraldo | TcII | 38.08 | 52.1 | 66 229 | 483 664 | 200 | 2409 | 15 803 | 60 | 454 | GCA_000327425.1 |
| Berenice | TcII | 40.89 | 51.2 | 156 193 | 926 516 | 1234 | 44 205 | 923 | 69 | Ulumina and Nanopore | Diaz-Viraque et al. 2019 |
| Y | TcII | 39.34 | 51.4 | 11 782 | 304 870 | 500 | 3885 | 10 127 | 71 | Ulumina | Callejas-Hernandez et al. 2018 |
*
Genome size for hybrid discrete typing units (DTUs) TcV and TcVI is for diploid genome, while for TcI and TcII genomes, haploid size is shown.