Table 3.
Gene ontology terms of the biological process category associated with Soyang type.
| PANTHER GO-Slim biological process term | Number of genes | p valued | Combined scoree | ||
|---|---|---|---|---|---|
| Reference lista | Target listb | Expectedc | |||
| Cellular metabolic process (GO:0044237) | 1744 | 84 | 32.73 | 7.02E − 16 | 230.1149 |
| Drug metabolic process (GO:0017144) | 127 | 23 | 2.38 | 5.71E − 13 | 226.2333 |
| Fatty acid metabolic process (GO:0006631) | 138 | 20 | 2.59 | 2.50E − 11 | 144.3277 |
| Response to chemical (GO:0042221) | 576 | 39 | 10.81 | 9.88E − 10 | 141.426 |
| Response to xenobiotic stimulus (GO:0009410) | 40 | 12 | 0.75 | 4.88E − 08 | 123.8619 |
| Cofactor metabolic process (GO:0051186) | 159 | 19 | 2.98 | 1.32E − 07 | 107.5996 |
| Cellular lipid metabolic process (GO:0044255) | 294 | 25 | 5.52 | 3.47E − 07 | 103.8276 |
| Carbohydrate metabolic process (GO:0005975) | 185 | 20 | 3.47 | 5.99E − 07 | 103.5943 |
| Ammonium ion metabolic process (GO:0097164) | 34 | 10 | 0.64 | 1.28E − 06 | 92.36633 |
| Nitrogen compound metabolic process (GO:0006807) | 38 | 10 | 0.71 | 1.41E − 06 | 85.06531 |
aNumber of genes in the reference list that map to this PANTHER classification category. bNumber of genes in the target gene list that map to this PANTHER classification category. cThe expected value is the number of genes that can be expected in the target gene list for this PANTHER category based on the reference list. dp values are determined by binomial statistics with Benjamini–Hochberg corrections. eCombined score is computed by taking the log of the p value and multiplying that by the Z-score of the deviation from the expected rank.