Table 3.
Synonymous and non-synonymous substitution rates of orthologous gene pairs.
| Gene name | A. thaliana gene-ID | S-sites | N-sites | ds | dn | dn/ds | Divergence time (MYA) |
|---|---|---|---|---|---|---|---|
| CsAGO1 | AT1G48410.1 | 730 | 2411 | 2.3054 | 0.1424 | 0.062 | 177.338 |
| CsAGO2/3a | AT1G31280.1 | 693.7 | 2270.3 | 3.016 | 0.4384 | 0.145 | 232.000 |
| CsAGO2/3b | AT1G31280.1 | 685 | 2288 | 2.9057 | 0.4463 | 0.154 | 223.515 |
| CsAGO2/3c | AT1G31280.1 | 500.5 | 1722.5 | 2.4394 | 0.5372 | 0.220 | 187.646 |
| CsAGO2/3d | AT1G31280.1 | 648.4 | 2054.6 | 2.3885 | 0.3841 | 0.161 | 183.731 |
| CsAGO2/3e | AT1G31280.1 | 687.3 | 2294.7 | 2.2713 | 0.4584 | 0.202 | 174.715 |
| CsAGO2/3f | AT1G31280.1 | 688 | 2249 | 2.0033 | 0.445 | 0.222 | 154.100 |
| CsAGO4a | AT2G27040.1 | 627.6 | 2036.4 | 3.2404 | 0.2366 | 0.073 | 249.262 |
| CsAGO4b | AT2G27040.1 | 595.4 | 2038.6 | 3.0558 | 0.1731 | 0.057 | 235.062 |
| CsAGO4c | AT2G27040.1 | 585.5 | 1937.5 | 2.9976 | 0.1655 | 0.055 | 230.585 |
| CsAGO5a | AT2G27880.1 | 620.4 | 2109.6 | 3.9804 | 0.2849 | 0.072 | 306.185 |
| CsAGO5b | AT2G27880.1 | 670.9 | 2188.1 | 3.8707 | 0.3082 | 0.080 | 297.746 |
| CsAGO5c | AT2G27880.1 | 634 | 2114 | 3.3537 | 0.3018 | 0.090 | 257.977 |
| CsAGO6 | AT2G32940.1 | 627.9 | 1982.1 | 1.9205 | 0.2331 | 0.121 | 147.731 |
| CsAGO7 | AT1G69440.1 | 689.4 | 2211.6 | 2.4501 | 0.2258 | 0.092 | 188.469 |
| CsAGO10a | AT5G43810.1 | 692.2 | 2229.8 | 3.1338 | 0.114 | 0.036 | 241.062 |
| CsAGO10b | AT5G43810.1 | 671.3 | 2250.7 | 3.4197 | 0.0963 | 0.028 | 263.054 |
| CsAGO10c | AT5G43810.1 | 654.4 | 2129.6 | 3.261 | 0.1854 | 0.057 | 250.846 |
| CsDCL1a | AT1G01040.1 | 1081 | 3326 | 2.356 | 0.141 | 0.060 | 181.231 |
| CsDCL1b | AT1G01040.1 | 656.7 | 1965.3 | 2.1638 | 0.1073 | 0.050 | 166.446 |
| CsDCL2 | AT3G03300.1 | 948.1 | 3008.9 | 2.1394 | 0.3262 | 0.152 | 164.569 |
| CsDCL3 | AT3G43920.1 | 1107.2 | 3542.8 | 2.4104 | 0.4073 | 0.169 | 185.415 |
| CsDCL4 | AT5G20320.1 | 1002 | 3279 | 2.1895 | 0.4017 | 0.183 | 168.423 |
| CsRDR1a | AT1G14790.1 | 736.8 | 2557.2 | 4.011 | 0.2683 | 0.067 | 308.538 |
| CsRDR1b | AT1G14790.1 | 737.1 | 2547.9 | 8.4387 | 0.2341 | 0.028 | 649.131 |
| CsRDR1c | AT1G14790.1 | 735.8 | 2558.2 | 3.4007 | 0.2312 | 0.068 | 261.592 |
| CsRDR2 | AT4G11130.1 | 819.4 | 2525.6 | 1.8328 | 0.2862 | 0.156 | 140.985 |
| CsRDR5a | AT2G19930.1 | 479.1 | 1623.9 | 3.5722 | 0.3541 | 0.099 | 274.785 |
| CsRDR5b | AT2G19930.1 | 224.9 | 786.1 | 14.5924 | 0.6591 | 0.045 | 1122.492 |
| CsRDR6a | AT3G49500.1 | 496.2 | 1477.8 | 2.7386 | 0.1925 | 0.070 | 210.662 |
| CsRDR6b | AT3G49500.1 | 842.3 | 2739.7 | 2.5387 | 0.2272 | 0.089 | 195.285 |
| CsRDR6c | AT3G49500.1 | 847.8 | 2734.2 | 2.5503 | 0.2152 | 0.084 | 196.177 |