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Comparison between sequence- and array-called genotypes at corresponding positions
| Dataset | Genotype concordance (%) | Non-reference sensitivity (%) | Non-reference discrepancy (%) |
|---|---|---|---|
| Raw | 99.18 | 99.75 | 1.11 |
| Filtered | 99.19 | 99.77 | 1.09 |
| Filtered & imputed | 99.82 | 99.95 | 0.24 |
