Table 3.
Predicted consequences of variants segregating in two lines. The table shows only the most sever consequence for a variant
| Consequence type (most severe) | Dam line | Sire line |
|---|---|---|
| Splice donor variant | 1396 | 1421 |
| Splice acceptor variant | 1126 | 1096 |
| Stop gained | 1615 | 1604 |
| Frameshift variant | 10,912 | 11,043 |
| Stop lost | 595 | 587 |
| Start lost | 423 | 421 |
| Inframe insertion | 990 | 987 |
| Inframe deletion | 1164 | 1186 |
| Protein altering variant | 62 | 62 |
| Missense variant | 70,758 | 69,983 |
| Splice region variant | 22,493 | 22,148 |
| Incomplete terminal codon variant | 12 | 11 |
| Synonymous variant | 76,977 | 75,279 |
| Stop retained variant | 149 | 135 |
| Start retained variant | 4 | 4 |
| Coding sequence variant | 98 | 96 |
| Mature miRNA variant | 12 | 16 |
| 5′ - UTR variant | 168,000 | 164,866 |
| 3′ - UTR variant | 348,135 | 344,514 |
| Non-coding transcript exon variant | 277,002 | 275,909 |
| Intron variant | 12,213,614 | 12,092,056 |
| Non-coding transcript variant | 11 | 10 |
| Upstream gene variant | 878,779 | 869,207 |
| Downstream gene variant | 757,364 | 750,548 |
| Intergenic variant | 8,942,362 | 8,848,730 |