Table 1.
Term | Meaning | Description |
---|---|---|
GEO | Gene Expression Omnibus | Public database containing all methylation array data analyzed in this paper. |
GSE | Study accession number | Unique identifier for a study record in GEO that includes a platform, set of sample records and supplemental matrices containing assay data. |
GSM | Sample accession number | Unique identifier for a sample record that includes sample-specific metadata and may also include supplemental sample datasets. |
CpG | Cytosine-guanine dinucleotide | Dinucleotide sequence, or locus, consisting of a cytosine followed by a guanine. |
DNAm | DNA methylation | The presence of a nucleotide-bound methyl group, typically at the 5’ cytosine position in a CpG locus. |
HM450K | HumanMethylome 450K | Popular array platform, manufactured by Illumina, that uses BeadArray technology to probe DNAm at roughly 480 000 CpG loci. |