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. 2021 Apr 22;3(2):lqab025. doi: 10.1093/nargab/lqab025

Table 1.

Abbreviations used frequently in this paper

Term Meaning Description
GEO Gene Expression Omnibus Public database containing all methylation array data analyzed in this paper.
GSE Study accession number Unique identifier for a study record in GEO that includes a platform, set of sample records and supplemental matrices containing assay data.
GSM Sample accession number Unique identifier for a sample record that includes sample-specific metadata and may also include supplemental sample datasets.
CpG Cytosine-guanine dinucleotide Dinucleotide sequence, or locus, consisting of a cytosine followed by a guanine.
DNAm DNA methylation The presence of a nucleotide-bound methyl group, typically at the 5’ cytosine position in a CpG locus.
HM450K HumanMethylome 450K Popular array platform, manufactured by Illumina, that uses BeadArray technology to probe DNAm at roughly 480 000 CpG loci.