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. 2021 Apr 23;21:125. doi: 10.1186/s12866-021-02193-3

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 4 — Organization and the pathway of genes related to the metabolism of carbohydrate substrates in the genome of five Erysipelotrichaceae isolates. a Organization of the genes related to the metabolism of 13 carbohydrate substrates in the genomes of five strains. Each arrow indicates a coding sequence (CDS) involved in the carbohydrate metabolism. All arrows were colored according to their functional roles. The detailed information about gene represented by each arrow is listed in Table S6 and the box under this Figure. “//” indicates a gap between two genes > 5 Kb. b The pathway for transport and catabolism of N-acetyl- galactosamine (GalNAc) in the five strains. The pathway was plotted with the relevant enzymes named by their gene symbols. c Phylogeny of Erysipelotrichaceae strains using the protein sequences encoded by genes in the pathway of GalNAc metabolism. The phylogenetic dendrogram was inferred by using the Maximum Likelihood method (1000 × replicates) and exhibited by FigTree