Table 1. Continuity table showing how plugins from BoneJ1 were carried forward.
| Functionality | Status |
|---|---|
| Analyse Skeleton | wrapped external (Fiji plugin) |
| Anisotropy | ported |
| Connectivity ♦ | ported |
| Delete Slice Range | legacy |
| Density Distribution ‡ * | ported external (PQCT) |
| Ellipsoid Factor | ported |
| Erode 3D, Dilate 3D | external (ImageJ plugins) |
| Fit Ellipsoid | ported |
| Fit Sphere | legacy |
| Fractal Dimension | ported |
| Help ‡ | discontinued |
| Interpolate ROIs | ported external (ImageJ1) |
| Intertrabecular Angles | new |
| Isosurface ★ | ported |
| ISQ Reader / Scanco ISQ | ported external (SCIFIO) |
| Kontron IMG | ported external (SCIFIO) |
| Moments of Inertia | legacy |
| Neck Shaft Angle | discontinued |
| Optimise Threshold | discontinued |
| Orientation ‡ | legacy |
| Particle Analyser | legacy |
| Plateness | discontinued |
| Purify | legacy |
| Stratec pQCT | ported external (SCIFIO & PQCT) |
| Skeletonise 3D | wrapped external (Fiji plugin) |
| Slice Geometry | legacy |
| Structure Model Index | discontinued |
| Thickness | wrapped external (Fiji plugin) |
| Usage reporting ♦ | ported |
| Volume Fraction † | ported |
★Renamed to Surface area
†Split into Surface fraction and Area/Volume fraction
‡Added to BoneJ1 after the publication of Doube et al. (2010) 1
*Split into an independent plug-in
♦Both legacy and modern implementations are provided due to the higher performance of legacy code