Table 3:
General statistics of the predicted protein-coding genes
Gene set | No. | Mean length (bp) | Mean exons per gene | Mean length (bp) | |||
---|---|---|---|---|---|---|---|
Transcripts | CDSs | Exons | Introns | ||||
De novo | SNAP | 52,359 | 15,377 | 488 | 4.8 | 101 | 3,894 |
GlimmerHMM | 196,665 | 7,017 | 525 | 3.3 | 157 | 2,776 | |
Augustus | 67,930 | 8,512 | 1,036 | 4.1 | 250 | 2,380 | |
Homolog | B. platifrons | 34,836 | 10,631 | 784 | 3.6 | 217 | 3,778 |
M. philippinarum | 27,088 | 7,174 | 643 | 2.8 | 227 | 3,568 | |
RNAseq | 53,578 | 16,183 | 966 | 6.0 | 275 | 2,900 | |
Final EVM models | 37,478 | 14,735 | 1,290 | 5.9 | 217 | 2,727 |
CDS: coding sequence.