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. 2021 Mar 24;7(4):242. doi: 10.3390/jof7040242

Table 2.

Twenty-seven strains of P. insidiosum successfully isolated from 5 provinces in Thailand. Sampling locations (with GPS coordinates), water sources, strain IDs, sequence homology analyses, and species-level identification and biotyping (based on DNA barcodes, multiplex PCR, and mass spectrometry) are summarized in the Table.

Province
(P. insidiosum Isolates)
Sampling Locations Water Source
(Collection Site)
Strain ID DNA Barcodes Genotype (Clade) MALDI-TOF MS
Code GPS
Coordinate
rDNA cox1 cox2 DNA
Barcode
Multiplex PCR Score Proteotype
Accession %
Identity
Accession %
Identity
Accession %
Identity
Bangkok
(n = 7)
BK01 13.770966, 100.516366 Pond#1 (zoo) BKDZ01 LC556017 99.9 LC547937 94.3 LC549516 100.0 III III - -
Pond#2 (zoo) BKDZ02 LC556018 98.0 LC547938 94.1 LC549517 100.0 III III 2.200 B
BK04 13.929843, 100.568340 Pond#3 (park) RT02 LC556073 99.9 LC547929 99.7 LC549523 100.0 II II - -
BK09 13.686055, 100.662055 Pond#4 (park) RM9-02 LC556063 99.5 LC547930 100.0 LC549519 100.0 II II - -
RM9-03 LC556064 99.8 LC547931 100.0 LC549520 100.0 II II - -
RM9-04 LC556065 99.8 LC547932 100.0 LC549521 100.0 II II - -
RM9-05 LC556066 99.4 LC547933 100.0 LC549522 100.0 II II - -
Chachoengsao
(n = 6)
CS01 13.668917, 101.191042 Pond#5 CCS01 LC556020 99.9 LC547923 100.0 LC549500 100.0 II II - -
CS03 13.606459, 101.232437 Rice Field#1 CCS03 LC556022 99.8 LC547924 100.0 LC549501 100.0 II II - -
CCS04 LC556023 100.0 LC547925 100.0 LC549502 100.0 II II - -
CCS05 LC556024 100.0 LC547926 100.0 LC549503 100.0 II II - -
Rice Field#2 CCS07 LC556025 99.9 LC547927 100.0 LC549504 100.0 II II - -
CCS08 LC556026 99.9 LC547928 100.0 LC549505 100.0 II II - -
Kanchanaburi
(n = 11)
KB01 14.138575, 99.324756 Pond#6 KCB12 LC556043 99.4 - - - - - II - -
KB03 14.027293, 99.791957 Rice Field#3 KCB01 LC556032 99.8 LC547939 94.4 LC549506 100.0 III III 2.490 B
KCB02 LC556033 99.9 LC547919 99.3 LC549507 100.0 II II 2.274 A
KCB03 LC556034 99.7 LC547940 94.3 LC549508 100.0 III III 2.151 B
KCB04 LC556035 99.4 LC547941 94.4 LC549509 100.0 III III 2.187 B
KCB05 LC556036 99.9 LC547920 99.3 LC549510 100.0 II II 2.149 A
KCB06 LC556037 99.7 LC547942 94.4 LC549511 100.0 III III - -
KCB07 LC556038 100.0 LC547921 99.3 LC549512 100.0 II II 2.196 A
KCB08 LC556039 99.9 LC547943 94.4 LC549513 100.0 III III 2.400 B
KCB09 LC556040 99.8 LC547944 94.4 LC549514 100.0 III III 2.187 B
KCB10 LC556041 99.4 LC547922 99.3 LC549515 100.0 II II 2.200 A
Ratchaburi
(n = 1)
RB01 13.806338, 99.689354 Pond#7 RCB04 LC556056 99.6 LC547936 99.3 LC549518 100.0 II II - -
Trang
(n = 2)
TG01 07.534068, 99.618507 Rice Field#4 TRG02 LC556075 99.9 LC547934 100.0 LC549524 100.0 II II - -
Pond#8 TRG03 LC556076 99.9 LC547935 100.0 LC549525 100.0 II II - -