(A-E) CyCIF analysis of MC38 HFD versus CD tumors.
(A) Representative image of CD tumors depicting segregation of immune
lineage markers. Scale bars are 50 μm.
(B) Cell populations identified by t-SNE embedding and density-based
clustering, showing the top three markers expressed per population.
(C) Heatmap depicting cell populations identified by HDBSCAN from
Figure 4B.
(D) Expression pattern of glycolytic genes in CD and HFD tumors.
(E) Representative t-CyCIF image showing GLUT1 (purple) and CD8α
(green) expression in the MC38 TME (HFD tumor shown). Scale bar is 500
μm.
(F-G) Representative images depicting real and simulated data used for
spatial analysis. GLUT1 expression in the HFD TME superimposed with scatter
points representing the x, y coordinates of cells classified as CD8+
T cells (F) or a similar number of uniformly-distributed data points across the
same tissue area as generated by Poisson-Disc sampling (G). Data points are
colored according to their inclusion (orange) or exclusion (blue) from areas of
high GLUT1 expression. Scale bars are 500 μm.
(H-I) Normalized fraction of CD8+ (H) and CD4+
(I) T cells overlapping areas of high GLUT1 or ACO2 expression in the MC38 tumor
microenvironment.
Statistical significance was assessed by student’s t-test (H-I).
(ns p>0.05, *p≤0.05, **p≤0.01, ***p≤0.001).
See also Figure
S4.