Table 2. Additional Propithecus spp. genome sequence descriptions. SNVs, single nucleotide variants.
Measure | P. diadema | P. diadema | P. tattersalli | P. tattersalli | P. verreauxi | P. verreauxi |
Reads | 765,447,178 | 749,239,612 | 717,945,044 | 716,893,458 | 954,251,816 | 790,776,474 |
Mapping rate | 94.3% | 94.5% | 94.6% | 95.1% | 94.5% | 94.6% |
PCR duplication rate | 4.0% | 3.4% | 3.2% | 2.5% | 15.0% | 3.4% |
Average phred quality |
36.1 | 36.1 | 36.3 | 36.8 | 38.9 | 35.8 |
Average depth coverage |
23× | 23× | 23× | 23× | 39× | 33× |
Variants called (after filtering) |
40,822,967 | 40,851,734 | 22,519,595 | 22,701,370 | 26,512,635 | 24,814,200 |
SNVs | 37,479,654 | 37,516,145 | 20,714,023 | 20,865,986 | 24,376,639 | 22,875,767 |
Indels | 3,343,313 | 3,335,589 | 1,805,572 | 1,835,384 | 2,281,800 | 1,938,433 |