Table 1.
Dilution series of SARS-CoV-2 and LamPORE
Concentration (copies/mL) | ORF1ab reads (median) | E1 reads (median) | N2 reads (median) | RT-qPCR result | ORF1ab Ct | N Ct |
---|---|---|---|---|---|---|
20 000 | 6429 | 808 | 2288 | Detected | 10.9 | 14.7 |
2000 | 1385 | 18 | 602 | Detected | 28.1 | 24.1 |
200 | 27 | 4 | 82 | Detected | 30.7 | 30.7 |
20 | 67 | 6 | 979 | Detected | N/D | 33 |
2 | 0 | 0 | 45 | Not detected | N/D | N/D |
0.2 | 16 | 0 | 0 | Not detected | N/D | N/B |
Abbreviations: Ct, cycle threshold; E1, envelope protein 1 gene; LamPORE, loop-mediated isothermal amplification (LAMP) coupled to nanopore sequencing technology; N2, nucleocapsid protein 2 gene; RT-qPCR, quantitative RT-PCR; SARS-CoV-2, severe acute respiratory symdrome coronavirus 2.