Table 1.
RNA-Seq paired-end genome sequence data, including sequence depth coverage, GC content and genome size of the Bean yellow mosaic virus (BYMV), Pea seed-borne mosaic virus (PSbMV), Pea early browning virus (PEBV) and Cucumber mosaic virus (CMV) isolates used in this study for primer design and target template for TG-Seq verification.
| Sample | Host | Virus | Coverage (x) c | No of Read Counts Mapping to the Virus | GC Content | Genome Size | GenBank Accession |
|---|---|---|---|---|---|---|---|
| 14BY a | Lentil | BYMV | 2307 | 1,331,893 | 39.4% | 9868 | LC500882 |
| 13C | Field pea | PSbMV | 718 | 507,189 | 41.5% | 9852 | SRR13206509 |
| LY-2 b | Faba bean | PEBV-RNA1 | 3899 | 235,443 | 40.7% | 7037 | LC528622 |
| LY-2 b | Faba bean | PEBV-RNA2 | 5606 | 1,252,888 | 42% | 2604 | LC528623 |
| 14C | Faba bean | CMV-RNA1 | 8774 | 318,290 | 45.3% | 3215 | SRR13197436 |
| 14C | Faba bean | CMV-RNA2 | 37,144 | 1,293,807 | 45.3% | 2892 | SRR13197436 |
| 14C | Faba bean | CMV-RNA3 | 10,615 | 260,700 | 47.1% | 2188 | SRR13197436 |
a = Genome sequence of PEBV as reported [29], b = BYMV as reported [30], 13C and 14C = new PSbMV and CMV genome sequences generated from this study. c = Average coverage depth across the genome (x) times. The three genomes missed a few nucleotides within the 5′UTR and 3′UTR genome regions but all the coding regions were intact.