| DGIdb | Drug–Gene Interaction database |
| NEC | endothelial cells derived from non-tumour tissue (liver sinusoidal, macrovascular, and other endothelial cells) |
| TEC | endothelial cells derived from tumour tissue (liver sinusoidal, macrovascular endothelial cells, and other endothelial cells) |
| LSEC | Liver sinusoidal endothelial cells |
| LEC | Liver endothelial cells (liver sinusoidal, macrovascular, and other endothelial cells) |
| HCC | Hepatocellular carcinoma |
| log2FC | logarithm of the fold change to the base 2 |
| WGCNA | Weighted Gene Network Analysis |
| GSEA | Gene Set Enrichment Analysis |
| GOTEA | GO Term Enrichment Analysis |
| GSVA | Gene Set Variation Analysis |
| GOTSSA | GO Term Semantic Similarity Analysis |
| FI | Functional interactions |
| DEG | differentially expressed gene |
| 5FU | 5-fluorouracil |