Table 2.

Statistics of raw and clean reads after quality control.

Sample	Raw Reads	Raw Bases	Clean Reads	Clean Bases	Error Rate (%)	Q20 (%)	Q30 (%)	GC Content (%)
30d-1	110,376,466	16,666,846,366	108,613,548	14,971,657,073	0.0241	98.25	95.24	55.15
30d-2	113,435,178	17,128,711,878	111,741,648	15,445,970,217	0.0241	98.27	95.16	54.05
30d-3	115,191,290	17,393,884,790	113,234,706	15,440,805,570	0.0242	98.22	95.10	54.40
90d-1	111,744,756	16,873,458,156	110,334,062	14,899,645,712	0.0237	98.48	95.60	51.03
90d-2	112,938,114	17,053,655,214	111,212,336	15,058,781,243	0.0237	98.47	95.59	52.15
90d-3	108,509,032	16,384,863,832	107,067,364	14,561,278,014	0.0237	98.48	95.53	51.38
150d-1	92,416,686	13,954,919,586	90,822,938	12,377,703,789	0.0239	98.38	95.32	50.39
150d-2	92,911,502	14,029,636,802	91,797,388	12,720,267,538	0.0238	98.44	95.40	49.73
150d-3	84,857,708	12,813,513,908	83,747,750	11,702,176,288	0.0241	98.34	95.16	49.99
210d-1	103,579,630	15,640,524,130	102,245,470	14,008,181,654	0.0237	98.51	95.54	49.84
210d-2	101,318,164	15,299,042,764	99,445,274	13,643,601,019	0.0237	98.45	95.52	52.12
210d-3	106,488,022	16,079,691,322	104,848,812	14,255,190,000	0.0237	98.45	95.56	50.78