ABC	ATP-binding cassette
API	application programming interface
ATP	adenosine triphosphate
BiGG	Biochemically, Genetically, and Genomically structured
BLAST	Basic Local Alignment Search Tool
BOF	biomass objective function
CDS	coding domain sequence
CF	cystic fibrosis
COBRA	Constraint-Based Reconstruction and Analysis
CTP	cytidine triphosphate
dATP	deoxyadenosine triphosphate
dCTP	deoxycytidine triphosphate
dGTP	deoxyguanosine triphosphate
dTTP	deoxythymidine triphosphate
EC	Enzyme Commission
ECF	energy-coupling factor
ECO	Evidence and Conclusion Ontology
FBA	flux balance analysis
fbc	flux balance constraints
FVA	flux variability analysis
GEM	genome-scale metabolic model
GPR	gene–protein reaction
GTP	guanosine triphosphate
HMDB	Human Metabolome Database
ID	identifier
ITP	inosine triphosphate
KEGG	Kyoto Encyclopedia of Genes and Genomes
MIRIAM	Minimal Information Requested in the Annotation of Models
NADH	reduced nicotinamide adenine dinucleotide
NADPH	reduced nicotinamide adenine dinucleotide phosphat
NCBI	National Center for Biotechnology Information
REST	representational state transfer
SBO	Systems Biology Ontology
SCFM	synthetic cystic fibrosis medium
SNM	synthetic nasal medium
URT	upper respiratory tract
UTP	uridine triphosphate
TCA	tricarboxylic acid
VMH	Virtual Metabolic Human