Aβ	amyloid-β
ABAD	aβ-binding alcohol dehydrogenase
AβPP	Aβ precursor protein
AD	Alzheimer’s disease
AGEs	Advanced glycation end products
ALCAT1	Acyl-CoA lysocardiolipin acyltransferase-1
ALD	Alcoholic liver disease
ALS	Amyotrophic lateral sclerosis
AMPK	Adenosine monophosphate activated protein kinase
ApoE4	Apolipoprotein e4
AS	Atherosclerosis
ATG32	Autophagy-related protein 32
ATP+	Adenosine triphosphate
AUTAC	Autophagy targeting chimera
AV	autophagic vacuoles
α-syn	𝛼-synuclein
BAT	Brown adipose tissue
BCL2	B-Cell CLL/Lymphoma 2
BCL2L13	Bcl2 like 13
BECN1	Coiled-coil myosin-like BCL2-interacting protein
BNIP3	BCL2/adenovirus E1B 19 kDa interacting protein 3
BNIP3L/NIX	BCL2/adenovirus E1B 19 kDa inter-acting protein 3 like
BP	Bipolar Disorder
BRCA1	Breast Cancer 1
CACNA1C	Calcium voltage-gated channel subunit alpha1 C
CaMKK-β	calcium-dependent protein kinase kinase-β
CHDH	Choline dehydrogenase
CHMP2B	Charged multivesicular body protein 2b
CK2α	casein Kinase 2
CL	Cardiolipin
CLN5	Ceroid-Lipofuscinosis, Neuronal 5
CMA	Chaperone mediated autophagy
CVD	Cardiovascular disease
CoQ	Coenzyme Q10
COX	Cytochrome c oxidase
cypD	Cyclophilin D
DCT-1	Daf-16/FOXO controlled germline tumor affecting-1
DISC1	Disrupted in schizophrenia 1
DJ-1	Parkinsonism Associated Deglycase
DPR	Dipeptide repeat
DR	Diabetic retinopathy
Drp1	Dynamin-related protein 1
ER	Endoplasmic reticulum
ETC	Electron transport chain
FBXO7	F-box only protein 7
FBXW7	F-box and WD40 domain protein only protein 7
FGF21	Fibroblast Growth Factor 21
FIS1	Mitochondrial fission 1 protein
FKBP8	FK506-binding protein 8
FTD	Frontotemporal Dementia
FUNDC1	FUN14 domain containing protein 1
GABA	γ-aminobutyric acid
GSK3β	Glycogen Synthase Kinase 3 Beta
GTPases	Guanosine triphosphate hydrolases
GPER	G protein-coupled estrogen receptor 1
HACE1	HECT Domain And Ankyrin Repeat Containing E3 Ubiquitin Protein Ligase 1
HD	Huntington’s disease
HIF1α	Hypoxia-inducible factor 1 Subunit Alpha
HIV	Human immunodeficiency virus
HF	Heart failure
HG	High glucose
IL-1β	Interleukin 1 beta
IMM	Inner mitochondrial membrane
IPC	Ischemic preconditioning
I/R	Ischemia-reperfusion
IRI	Ischemia/reperfusion injury
KA	Kainic acid
KO	Knock out
LC3	Microtubule-associated protein 1 light chain 3
LIR	LC3-interacting region
L-OPA1	Full-length OPA1
LRRK2	Leucin-rich repeat serine/threonine kinase2
MELAS	Mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes
MERRF	Myoclonic epilepsy with ragged red fibers
Mff	Mitochondrial fission factor
MFN	Mitofusin
mHtt	Mutant Htt
MI	Myocardial infarction
MIDs	Mitochondrial Disorders
MiD49	Mitochondrial dynamic protein 49 kDa
MiD51	Mitochondrial dynamic protein 51 kDa
MIM	Mitochondrial inner membrane
MIRAS	Myoclonic mitochondrial recessive ataxia syndrome
MIRO	Mitochondrial Rho
MitoPLD	Mitochondrial Phospholipase D
MSN	Medium spiny neurons
mTOR	Mechanistic Target of Rapamycin Kinase
MEMSA	Myoclonus, epilepsy, myOPAthy, sensory ataxia
MPP	Mitochondrial processing peptidase
MPP+	1methyl-4-phenylpyridinium
mPTP	mitochondrial permeability transition pore
MSNs	Striatal medium spiny GABA neurons
Mst1	Macrophage stimulating 1
mtDNA	Mitochondrial DNA
MT-ND5	Mitochondrially Encoded NADH:Ubiquinone Oxidoreductase Core Subunit 5
MT-ND2	Mitochondrially Encoded NADH:Ubiquinone Oxidoreductase Core Subunit 2
NAD+	Nicotinamide adenine dinucleotide
NADH+	Nicotinamide adenine dinucleotide hydride
NAFLD	Non-alcoholic fatty liver disease
NCAN	Neurocan
NBR1	Neighbor of BRCA1 gene 1
NDP52	Nuclear domain 10 protein 52
NF-κB	Nuclear factor kappa-light-chain-enhancer of activated B cells
NLRP3	NLR Family Pyrin Domain Containing 3
NO	Nitric oxide
6-OHDA	6-hydroxydopamine
OMM	Outer mitochondrial membrane
ONOO-	Peroxynitrite
OPA1	Dynamin-like GTPase optic atrophy 1
OPTN	Optineurin
oxLDL	Oxidized LDL
OXPHOS	Oxidative phosphorylation
PARL	Presenilin-associated rhomboid-like protein
PB1	Phox and Bem1 domain
PD	Parkinson’s disease
PDE4	Phosphodiesterase 4A
PGC-1𝛼	Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
PHB	Prohibitin 2
PINK1	PTEN-induced putative kinase 1
PKC	Protein Kinase C
PSCI	Post-stroke cognitive impairment
pTau	Tau protein
p62	Sequestosome-1
RBX1	Ring-Box 1
ROS	Reactive oxygen species
SAMP8	Senescence accelerated mice P8
SCAE	Spinocerebellar ataxia with epilepsy
SCF complex	Skp-Cullin-F-box ubiquitin E3 ligase complex
SE	Status epilepticus
Serine 65	Ser65
SIRT1	Silent Mating Type Information Regulation 2, S. Cerevisiae, Homolog 1
SLP-2	Stomatin-like protein 2
SMURF1	SMAD Specific E3 Ubiquitin Protein Ligase 1
Sod1	Superoxide dismutase 1
SREBF1	Sterol regulatory element binding transcription factor 1
STEMI	ST-Elevation Myocardial Infarction
TAX1	Trans-activating transcriptional regulatory protein of HTLV-1
TAX1BP1	TAX1 binding protein 1
TBC1D	TBC1 domain family member
TBK1	Tank-binding kinase 1
TDP-43	TAR DNA-binding protein 43
TENM4	Teneurin Transmembrane Protein 4
TFEB	Transcription Factor EB
TIMM	Translocase of the inner mitochondrial membrane
TNIK	TRAF2 And NCK Interacting Kinase
TLR	Toll-like receptor
FUS/TLS	Translocated in Liposarcoma
TOMM	Translocase of the outer mitochondrial membrane
TSPO	Translocator protein
Trx	Thioredoxin
TXNIP	Thioredoxin-Interacting Protein
T2D	Type 2 diabetes
UPS	Ubiquitin proteasome system
USP30	Ubiquitin carboxyl-terminal hydrolase 30
VDAC1	Voltage-dependent anion channel 1
VCP	Valosin-containing protein
VSMCs	Vascular smooth muscle cell
Rab-GAP	Rab GTPase activating protein
RGCs	Retinal ganglion cells
VCI	Vascular cognitive impairment
WAT	White adipose tissue
WDFY3/Alfy	WD Repeat And FYVE Domain Containing 3
WT	Wild type