Table 1.
Summary of three commonly used structural determination methods.
Method | Sample Requirement | Advantages | Limitations |
---|---|---|---|
NMR | Samples must be in solution | (1) Moelcules are studied in solution (2) Protein folding studies can be done by monitoring NMR spectra (3) Efficient in mapping interactions with other molecules |
(1) The upper weight limit for NMR structure determination is ~30 kDa (2) Requires a protein sample be soluble in a high-concentrated solution (3) Overlapped spectrum |
X-ray | Samples must be crystallized in a lattice structure | (1) Provides high-resolution information (2) Does not requie a protein be soluble in a high-concentrated solution (3) Applied to proteins or macromolecules in a wide molecular weight range |
(1) Requires a protein crystal (2) Crystal contacts can distort protein structure (3) Not suitable with fairly flexible molecules |
Cryo-EM | Sample is frozen in its native state | (1) High enough resolution (2) Does not require a protein crystal (3) Does not requie a protein be soluble in a high-concentrated solution |
(1) Complex measurements and data analysis (2) Difficult to use for proteins with MW below 300 kDa (3) The technology still needs to be thoroughly tested by the scientific community |