Table A5.
Repeat sequences present in the D. glaucum chloroplast genome.
| SN | Repeat Size | Repeat Position 1 | Repeat Type | Repeat Location | Repeat Position 2 | Repeat Location 2 | E-Value |
|---|---|---|---|---|---|---|---|
| 1 | 55 | 0 | P | IGS | 87,683 | rps19 | 5.45E-24 |
| 2 | 52 | 30,403 | P | IGS | 30,403 | IGS | 3.49E-22 |
| 3 | 47 | 40,642 | F | psaB | 42,866 | psaA | 3.57E-19 |
| 4 | 39 | 45,750 | F | ycf3 Intron | 102,076 | IGS | 2.34E-14 |
| 5 | 39 | 45,750 | P | ycf3 Intron | 144,199 | IGS | 2.34E-14 |
| 6 | 34 | 9240 | R | IGS | 9240 | IGS | 2.40E-11 |
| 7 | 34 | 44,864 | P | ycf3 Intron | 44,864 | ycf3 Intron | 2.40E-11 |
| 8 | 31 | 9248 | R | IGS | 9248 | IGS | 1.53E-09 |
| 9 | 30 | 8750 | P | IGS | 8750 | IGS | 6.13E-09 |
| 10 | 29 | 30,292 | F | IGS | 30,321 | IGS | 2.45E-08 |
| 11 | 29 | 95,068 | F | ycf2 | 95,086 | ycf2 | 2.45E-08 |
| 12 | 29 | 95,068 | P | ycf2 | 151,199 | ycf2 | 2.45E-08 |
| 13 | 29 | 95,086 | P | ycf2 | 151,217 | ycf2 | 2.45E-08 |
| 14 | 29 | 151,199 | F | ycf2 | 151,217 | ycf2 | 2.45E-08 |
| 15 | 28 | 8507 | P | trnS-GCU | 46,871 | trnS-GGA | 9.81E-08 |
| 16 | 26 | 9240 | F | IGS | 9253 | IGS | 1.57E-06 |
| 17 | 26 | 10,325 | P | IGS | 10,357 | IGS | 1.57E-06 |
| 18 | 25 | 38,275 | R | IGS | 38,275 | IGS | 6.28E-06 |
| 19 | 25 | 128,760 | R | ycf1 | 128,760 | ycf1 | 6.28E-06 |
| 20 | 24 | 8760 | R | IGS | 8760 | IGS | 2.51E-05 |
| 21 | 24 | 32,513 | P | IGS | 32,513 | IGS | 2.51E-05 |
| 22 | 24 | 44,474 | P | IGS | 73,687 | clpP Intron | 2.51E-05 |
| 23 | 24 | 127,804 | P | IGS | 127,804 | IGS | 2.51E-05 |
| 24 | 23 | 3434 | P | matK | 91,728 | ycf2 | 1.01E-04 |
| 25 | 23 | 3434 | F | matK | 154,563 | ycf2 | 1.01E-04 |
| 26 | 23 | 8872 | F | IGS | 8895 | IGS | 1.01E-04 |
| 27 | 23 | 10,643 | R | IGS | 10,643 | IGS | 1.01E-04 |
| 28 | 23 | 30,247 | F | IGS | 30,268 | IGS | 1.01E-04 |
| 29 | 23 | 44,479 | R | IGS | 44,479 | IGS | 1.01E-04 |
| 30 | 23 | 92,588 | F | ycf2 | 92,612 | ycf2 | 1.01E-04 |
| 31 | 23 | 92,588 | P | ycf2 | 153,679 | ycf2 | 1.01E-04 |
| 32 | 23 | 92,612 | P | ycf2 | 153,703 | ycf2 | 1.01E-04 |
| 33 | 23 | 153,679 | F | ycf2 | 153,703 | ycf2 | 1.01E-04 |
| 34 | 22 | 10,745 | F | IGS | 10,767 | IGS | 4.02E-04 |
| 35 | 22 | 15,273 | C | IGS | 28,813 | IGS | 4.02E-04 |
| 36 | 22 | 43,907 | P | IGS | 96,899 | ycf2 | 4.02E-04 |
| 37 | 22 | 43,907 | F | IGS | 149,393 | IGS | 4.02E-04 |
| 38 | 22 | 44,898 | P | ycf3 Intron | 44,898 | ycf3 Intron | 4.02E-04 |
| 39 | 22 | 48,054 | F | IGS | 48,074 | IGS | 4.02E-04 |
| 40 | 22 | 63,409 | P | IGS | 63,409 | IGS | 4.02E-04 |
| 41 | 22 | 103,201 | R | IGS | 103,201 | IGS | 4.02E-04 |
| 42 | 22 | 103,201 | C | IGS | 143,091 | IGS | 4.02E-04 |
| 43 | 22 | 113,539 | P | ycf1 | 113,539 | ycf1 | 4.02E-04 |
| 44 | 22 | 113,539 | F | ycf1 | 132,753 | ycf1 | 4.02E-04 |
| 45 | 22 | 132,753 | P | ycf1 | 132,753 | ycf1 | 4.02E-04 |
| 46 | 22 | 143,091 | R | IGS | 143,091 | IGS | 4.02E-04 |
| 47 | 21 | 8511 | F | trnS-GCU | 37,322 | trnS-UGA | 1.61E-03 |
| 48 | 21 | 8723 | R | IGS | 8723 | IGS | 1.61E-03 |
| 49 | 21 | 9240 | R | IGS | 9240 | IGS | 1.61E-03 |