Table A6.
Repeat sequences present in the C. chrysantha chloroplast genome.
| SN | Repeat Size | Repeat Position 1 | Repeat Type | Repeat Location | Repeat Position 2 | Repeat Location 2 | E-Value |
|---|---|---|---|---|---|---|---|
| 1 | 52 | 30,002 | P | IGS | 30,002 | IGS | 3.47E-22 |
| 2 | 47 | 40,405 | F | psaB | 42,629 | psaA | 3.55E-19 |
| 3 | 38 | 29,603 | P | IGS | 29,603 | IGS | 9.31E-14 |
| 4 | 34 | 32,963 | P | IGS | 32,963 | IGS | 2.38E-11 |
| 5 | 33 | 117,125 | F | IGS | 117,141 | IGS | 9.53E-11 |
| 6 | 29 | 92,074 | F | ycf2 | 92,098 | ycf2 | 2.44E-08 |
| 7 | 29 | 92,074 | P | ycf2 | 153,124 | ycf2 | 2.44E-08 |
| 8 | 29 | 92,098 | P | ycf2 | 153,148 | ycf2 | 2.44E-08 |
| 9 | 29 | 118,905 | F | IGS | 118,921 | IGS | 2.44E-08 |
| 10 | 29 | 153,124 | F | ycf2 | 153,148 | ycf2 | 2.44E-08 |
| 11 | 28 | 8401 | P | trnS-GCU | 46,575 | trnS-GGA | 9.76E-08 |
| 12 | 27 | 37,820 | R | IGS | 37,820 | IGS | 3.90E-07 |
| 13 | 26 | 79 | P | IGS | 79 | IGS | 1.56E-06 |
| 14 | 26 | 9949 | P | IGS | 9981 | IGS | 1.56E-06 |
| 15 | 26 | 116,265 | P | IGS | 116,265 | IGS | 1.56E-06 |
| 16 | 24 | 28,548 | P | IGS | 28,548 | IGS | 2.50E-05 |
| 17 | 24 | 32,078 | P | IGS | 32,078 | IGS | 2.50E-05 |
| 18 | 24 | 58,529 | P | IGS | 58,558 | IGS | 2.50E-05 |
| 19 | 24 | 76,983 | P | IGS | 77,008 | IGS | 2.50E-05 |
| 20 | 24 | 116,687 | F | IGS | 116,710 | IGS | 2.50E-05 |
| 21 | 23 | 4642 | F | IGS | 4708 | IGS | 9.99E-05 |
| 22 | 23 | 46,656 | F | IGS | 46,676 | IGS | 9.99E-05 |
| 23 | 23 | 97,249 | F | IGS | 97,271 | IGS | 9.99E-05 |
| 24 | 23 | 97,249 | P | IGS | 147,957 | IGS | 9.99E-05 |
| 25 | 23 | 97,271 | P | IGS | 147,979 | IGS | 9.99E-05 |
| 26 | 23 | 147,957 | F | IGS | 147,979 | IGS | 9.99E-05 |
| 27 | 22 | 38,011 | P | IGS | 38,011 | IGS | 4.00E-04 |
| 28 | 22 | 67,702 | F | IGS | 67,724 | IGS | 4.00E-04 |
| 29 | 22 | 113,002 | P | ycf1 | 113,002 | ycf1 | 4.00E-04 |
| 30 | 22 | 113,002 | F | ycf1 | 132,227 | ycf1 | 4.00E-04 |
| 31 | 22 | 117,470 | R | IGS | 117,470 | IGS | 4.00E-04 |
| 32 | 22 | 132,227 | P | ycf1 | 132,227 | ycf1 | 4.00E-04 |
| 33 | 21 | 314 | P | IGS | 363 | IGS | 1.60E-03 |
| 34 | 21 | 4878 | R | IGS | 4878 | IGS | 1.60E-03 |
| 35 | 21 | 5114 | C | IGS | 32,753 | IGS | 1.60E-03 |
| 36 | 21 | 5141 | F | IGS | 5166 | IGS | 1.60E-03 |
| 37 | 21 | 8068 | C | IGS | 30,261 | IGS | 1.60E-03 |
| 38 | 21 | 8405 | F | trnS-GCU | 37,002 | trnS-UGA | 1.60E-03 |
| 39 | 21 | 37,002 | P | trnS-UGA | 46,578 | trnS-GGA | 1.60E-03 |
| 40 | 21 | 38,404 | F | trnfM-CAU | 69,049 | trnP-GGG - trnP-UGG | 1.60E-03 |
| 41 | 21 | 56,602 | F | IGS | 56,623 | IGS | 1.60E-03 |
| 42 | 21 | 74,400 | R | IGS | 74,400 | IGS | 1.60E-03 |
| 43 | 21 | 117,116 | R | IGS | 117,116 | IGS | 1.60E-03 |
| 44 | 21 | 119,109 | R | IGS | 119,109 | IGS | 1.60E-03 |
| 45 | 20 | 160 | F | IGS | 8149 | psbI | 6.39E-03 |
| 46 | 20 | 4063 | F | trnK-UUU Intron | 23,615 | rpoC1 Intron | 6.39E-03 |
| 47 | 20 | 4063 | P | trnK-UUU Intron | 28,441 | IGS | 6.39E-03 |
| 48 | 20 | 4064 | F | trnK-UUU Intron | 111,518 | IGS | 6.39E-03 |
| 49 | 20 | 4064 | P | trnK-UUU Intron | 133,713 | IGS | 6.39E-03 |