| 3D | three dimensional |
| MS | mass spectrometry/spectrometer |
| FT-MS | Fourier transform mass spectrometer/spectrometry |
| FT-ICR | Fourier transform ion cyclotron resonance |
| ADD | accumulation during detection |
| ICR | ion cyclotron resonance |
| AMP | absorption-mode processing |
| aFT | absorption-mode Fourier transform |
| mFT | magnitude-mode Fourier transform |
| SNR | signal-to-noise ratio |
| RP | resolving power |
| FWHM | full width half maximum |
| HR/AM | high-resolution/accurate mass |
| TOF | time of flight |
| IMS | ion mobility spectrometry |
| MSI | mass spectrometry imaging |
| DESI | desorption electrospray ionization |
| MALDI | matrix-assisted laser desorption/ionization |
| 1,5-DAN | 1,5-diaminonapthalene |
| ITO | indium tin oxide |
| H&E | hematoxylin and eosin |
| PC | phosphatidylcholine |
| PS | phosphatidylserine |
| PE | phosphatidylethanolamine |
| SM | sphingomyelin |
| CL | cardiolipin |