Table 3.

SNP distance matrix among the S. Typhimurium genomes. The SNP differences between each pair of S. Typhimurium were determined by the CSI Phylogeny 1.4 tool [16].

	DP_F10	DP_N16	DP_N28	JE_2727	DT104b ref.	JM_04.26	MC_04-0529	R13	TM75-404	DT104 ref.	LT2
DP_F10	0	59	60	53	1095	72	76	59	139	88	655
DP_N16	59	0	5	50	1088	69	65	52	134	77	652
DP_N28	60	5	0	49	1087	70	66	53	133	78	651
JE_2727	53	50	49	0	1082	57	61	44	122	71	644
DT104b ref.	1095	1088	1087	1082	0	1075	1065	1064	1072	1059	862
JM_04.26	72	69	70	57	1075	0	58	39	117	66	639
MC_04-0529	76	65	66	61	1065	58	0	27	123	62	627
R13	59	52	53	44	1064	39	27	0	104	51	626
TM75-404	139	134	133	122	1072	117	123	104	0	105	636
DT104 ref.	88	77	78	71	1059	66	62	51	105	0	617
LT2	655	652	651	644	862	639	627	626	636	617	0