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. 2021 Apr 26;22(Suppl 2):65. doi: 10.1186/s12859-021-03963-6

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — MS/MS spectra matches and their peptide sequences. b-ions are displayed in blue, y-ions in red, and matches between spectra in dashed lines. Intensities of all peaks are set to an arbitrary unit value in theoretical spectra. The EAEDISEK MS/MS spectrum (in the middle) shares 7 masses (black dashed lines) with the native EAEISEK spectrum (above). After a shift of $Δ m$ at position 3 in EAEISEK (below), 8 new masses match with EAEDISEK (as shown in green), and one match is removed (grey dashed line). The SPC is then improved from 7 (raw SPC) to 14 (shift SPC)