Table 1.
Proteins involved in defense mechanisms with a significant change in abundance at 24, 48 and 96 h post-inoculation with P. infestans.
| 24 h | 48 h | 96 h | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene Accession | Protein Description | Arabidopsis Homolog | # rep a |
log2 ratio b | p c | # rep a |
log2 ratio b | p c | # rep a | log2 ratio b | p c |
| Solyc10g055800 | chitinase | AT3G12500 | 3 | −0.121 | 0.804 | 3 | 0.454 | 0.347 | 3 | 1.816 | 0.023 |
| Solyc02g082920 | class II chitinase | AT3G12500 | 3 | 0.140 | 0.326 | 3 | 0.556 | 0.009 | 3 | 2.982 | 0.019 |
| Solyc01g008620 | glucan endo-1,3-beta-glucosidase | AT4G16260 | 3 | 0.072 | 0.133 | 3 | −0.022 | 0.933 | 3 | 2.563 | 0.001 |
| Solyc10g079860 | LEQB L.esculentum TomQ’b beta (1,3) glucanase | AT3G57270 | 3 | 0.089 | 0.496 | 3 | 0.612 | 0.344 | 3 | 4.055 | 0.007 |
| Solyc09g090990 | major allergen Pru ar.1 (PR-10 family) | AT5G45860 | 3 | 0.755 | 0.162 | 3 | 2.446 | 0.002 | 3 | 4.479 | 0.001 |
| Solyc07g005370 | norcoclaurine synthase (NCS; PR-10/Bet v 1 family) | AT2G26040 | 3 | 0.135 | 0.642 | 3 | 0.375 | 0.153 | 3 | −0.756 | 0.033 |
| Solyc08g080670 | pathogenesis-related 5-like protein (PR-5) | AT4G11650 | 3 | −1.633 | 0.005 | 3 | −0.298 | 0.623 | 3 | 0.394 | 0.436 |
| Solyc01g097240 | pathogenesis-related protein 4 (PR-4) | AT3G04720 | 3 | 0.199 | 0.027 | 3 | 0.522 | 0.058 | 3 | 3.745 | 0.007 |
| Solyc09g090980 | pathogenesis-related protein STH-2-like (PR-10 family) | AT1G24020 | 3 | 0.185 | 0.009 | 3 | 1.206 | 0.010 | 3 | 3.456 | 0.004 |
a Number of biological replicates in which the protein was quantifiable. b The average log2 ratio of protein quantity representing (inoculated/mock) from three biological replicates. c The p-value was calculated by Student’s t-test if the protein could be quantified from three biological replicates. Color codes: red, significant quantity change with greater than 0.58 of log2 ratio (p < 0.05); blue, significant quantity change less than −0.58 of log2 ratio; grey, no significant change between the inoculated and mock group (p ≥ 0.05) or not quantified in all three replicates (NQ); white, the quantity change is between 0.58 and −0.58 of log2 ratio (p < 0.05).