Table 2.
Proteins involved in immune regulation with a significant change in abundance at 24, 48 and 96 h post-inoculation with P. infestans.
| 24 h | 48 h | 96 h | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene Accession | Protein Description | Arabidopsis Homolog | # rep a |
log2 ratio b | p c | # rep a |
log2 ratio b | p c | # rep a | log2 ratio b | p c |
| Solyc02g077880 | auxin-repressed protein (ARP) | AT2G33830 | 3 | −0.404 | 0.202 | 3 | −1.360 | 0.072 | 3 | −2.441 | 0.007 |
| Solyc03g033790 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT3G50930 | 1 | 0.083 | NQ | 2 | 0.304 | NQ | 3 | 1.340 | 0.021 |
| Solyc06g068840 | calcium-dependent phospholipid-binding copine family protein | AT5G61900 | 2 | 0.262 | NQ | 3 | 0.534 | 0.181 | 3 | 1.015 | 0.030 |
| Solyc02g067750 | carbonic anhydrase (CA) | AT3G01500 | 3 | 1.884 | 0.719 | 3 | −1.904 | 0.374 | 3 | 8.330 | 0.012 |
| Solyc04g078540 | cysteine proteinase RD21a | AT1G47128 | 3 | 0.331 | 0.102 | 3 | −0.029 | 0.888 | 3 | 0.716 | 0.036 |
| Solyc06g071280 | enhanced disease susceptibility 1 (EDS1) | AT3G48090 | 3 | −0.015 | 0.100 | 3 | 0.092 | 0.594 | 3 | 0.930 | 0.037 |
| Solyc06g071050 | hypersensitive-induced response protein (HIR) | AT5G62740 | 2 | −0.334 | NQ | 3 | −0.430 | 0.525 | 3 | 0.686 | 0.016 |
| Solyc03g098730 | Kunitz-type protease inhibitor (KTI) | AT1G17860 | 3 | −0.607 | 0.220 | 3 | 0.076 | 0.744 | 3 | 2.740 | 0.008 |
| Solyc07g043320 | myosin heavy chain, embryonic smooth protein | AT2G32240 | 3 | 0.129 | 0.276 | 3 | 0.578 | 0.188 | 3 | 1.050 | 0.030 |
| Solyc00g174340 | pathogenesis-related protein 1b (PR-1b) | AT4G33720 | 3 | 0.058 | 0.484 | 3 | 0.591 | 0.025 | 3 | 2.902 | 0.008 |
| Solyc09g007010 | pathogenesis-related protein 1 (PR-1) | AT4G33720 | 3 | 0.097 | 0.354 | 3 | 0.411 | 0.302 | 3 | 2.296 | 0.043 |
| Solyc02g077040 | phytophthora-inhibited protease 1 (PIP1) | AT3G49340 | 3 | 0.183 | 0.052 | 3 | 0.291 | 0.316 | 3 | 1.585 | 0.024 |
a Number of biological replicates in which the protein was quantifiable. b The average log2 ratio of protein quantity representing (inoculated/mock) from three biological replicates. c The p-value was calculated by Student’s t-test if the protein could be quantified from the three biological replicates. Color codes: red, significant quantity change with greater than 0.58 of log2 ratio (p < 0.05); blue, significant quantity change less than −0.58 of log2 ratio; grey, no significant change between the inoculated and mock group (p ≥ 0.05) or not quantified in all three replicates (NQ); white, the quantity change is between 0.58 and −0.58 of log2 ratio (p < 0.05).