Fig. 3.

Dynamics and functions of genes with changing expression patterns over time. a Heatmap of gene expression changes. Up-regulated genes are shown in orange, down-regulated genes are shown in purple. These 91 genes were selected based on FDR correction of 0.01 and a |log₂FC| > 2 in at least two time points across 48 h. The genes were ordered using Euclidean distance. b Number of significantly up- and down-regulated genes, from the core 91 DE genes, at each timepoint (in red and blue, correspondingly). Known immune genes are shaded over red. No down-regulated immune genes were observed