Table 1.
Biological processes significantly affected by the DEGs in treated samples. (Top ten, ranked by gene numbers enriched in a specific process).
| Category | Term | Description | Count | P |
|---|---|---|---|---|
| Up-regulated DEGs | ||||
| BP | GO:0006091 | Generation of precursor metabolites and energy | 28 | 1.37E-13 |
| BP | GO:0055114 | Oxidation reduction | 25 | 2.72E-05 |
| BP | GO:0009611 | Response to wounding | 24 | 3.98E-06 |
| BP | GO:0010033 | Response to organic substance | 23 | 1.07E-03 |
| BP | GO:0019318 | Hexose metabolic process | 22 | 8.75E-13 |
| BP | GO:0005996 | Monosaccharide metabolic process | 22 | 1.47E-11 |
| BP | GO:0042592 | Homeostatic process | 22 | 3.95E-03 |
| BP | GO:0006006 | Glucose metabolic process | 21 | 1.05E-13 |
| BP | GO:0042127 | Regulation of cell proliferation | 19 | 4.54E-02 |
| BP | GO:0044057 | Regulation of system process | 16 | 5.92E-05 |
| Down-regulated DEGs | ||||
| BP | GO:0010604 | Positive regulation of macromolecule metabolic process | 22 | 1.20E-02 |
| BP | GO:0033554 | Cellular response to stress | 21 | 1.97E-04 |
| BP | GO:0042981 | Regulation of apoptosis | 20 | 2.32E-02 |
| BP | GO:0043067 | Regulation of programmed cell death | 20 | 2.54E-02 |
| BP | GO:0010941 | Regulation of cell death | 20 | 2.62E-02 |
| BP | GO:0009891 | Positive regulation of biosynthetic process | 19 | 1.17E-02 |
| BP | GO:0007049 | Cell cycle | 19 | 3.14E-02 |
| BP | GO:0006412 | Translation | 18 | 6.09E-06 |
| BP | GO:0006396 | RNA processing | 18 | 2.41E-03 |
| BP | GO:0031328 | Positive regulation of cellular biosynthetic process | 18 | 2.05E-02 |
DEG — differentially expressed genes; BP — biological process; GO — gene oncology; Count — gene numbers enriched in a specific BP term.