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. 2021 Apr 28;28(8):4560–4568. doi: 10.1016/j.sjbs.2021.04.057

Table 2.

Showing docking results of selected drugs with receptor SARS-CoV-2 spike protein (PDB: 6VYB). Where vdW = Van der Waals, Hbond = Hydrogen bond, and desolv Energy = desolvation energy and in Hbond name column UNK1 = selected drug compounds.

S. No. Drug Name Final Intermolecular Energy (Kcal/mol) vdW + Hbond + desolv Energy (Kcal/mol) Electrostatic Energy (Kcal/mol) Inhibition Constant Hbond name Hbond length (Angstrom) Residues involved in hydrophobic interaction
1. Azithromycin −4.60 −4.83 +0.23 832.15 uM A:ARG214:HH21 - :UNK1:O20 1.72 Ala27,Tyr28,Thr29,Asn30,Trp64,Arg214,Asp215
:UNK1:H - A:TYR28:O 1.67
:UNK1:C31 - A:ASP215:OD1 3.11
:UNK1:C31 - A:ASP215:OD2 2.98



2. Doxorubicin −6.38 −5.35 −1.04 98.42 uM :UNK1:H66 - A:ASP215:OD2 1.83 Tyr28,Thr29,Asn30,Phe32,Phe59,Trp64,Arg214,Asp215,Gln218
:UNK1:H67 - A:ASP215:OD1 2.31
:UNK1:H65 - A:TYR28:O 1.80
:UNK1:C6 - A:ASP215:OD2 3.30
:UNK1:C2 - A:ASP215:OD1 3.42



3. Exemestane −5.49 −5.37 −0.12 94.22 uM A:ARG214:HH11 - :UNK1:O11 2.02 Ala27,Trp64,Phe65,His66,Ile68,Arg214



4. Gatifloxacin −5.54 −3.62 −1.92 476.05 uM :UNK1:H38 - A:ASP215:OD2 1.74 Ala27, Tyr28,Thr29,Asn30,Trp64,Arg214,Asp215
A:TYR28:HN - :UNK1 2.66



5. Sulbactam −5.47 −3.05 −2.42 112.85 uM A:ALA27:HN2 - :UNK1:O13 1.96 Ala27,Thr63,Trp64,Phe65,His66
A:ALA27:HN3 - :UNK1:O14 1.75
A:HIS66:HN - :UNK1:O7 2.02
:UNK1:H23 - A:TRP64:O 2.01



6. Tobramycin −5.25 −4.80 −0.46 52.94 mM A:ASN30:HN - :UNK1:O19 2.05 Tyr28,Thr29,Asn30,Phe32,Trp64,Leu21,Arg214,Asp215,Leu216,Pro217, Gln218
A:ARG214:HH21 - :UNK1:O14 2.82
:UNK1:H49 - A:TYR28:O 2.10
:UNK1:H50 - A:TYR28:O 2.95
:UNK1:H53 - A:ASP215:OD2 1.90
:UNK1:H66 - A:ASP215:OD1 2.35
:UNK1:H66 - A:LEU216:O 2.21
:UNK1:H67 - A:ASP215:OD1 2.08
:UNK1:C4 - A:ASP215:OD2 3.75
:UNK1:C12 - A:TYR28:O 3.05