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. 2021 Mar 19;296:100568. doi: 10.1016/j.jbc.2021.100568

Table 1.

Data collection and refinement statistics

NUDT15 WT V18I R139C R139H V18_V19insGV
Data collection
 Synchrotron and beamline MAXIV BioMAX MAXIV BioMAX MAXIV BioMAX MAXIV BioMAX DLS I24
 Space group P 1 21 1 C 1 2 1 P 1 P 1 P 1 21 1
 Cell dimensions
 a,b,c (Å) 63.6, 45.6, 67.0 115.5, 34.6, 75,2 34.9, 43.8, 60.4 41.3, 60.2, 69.3 63.4, 45.7, 66.3
 α, β, γ (°) 90, 116, 90 90.0, 148.6, 90.0 91.6, 106.7, 113.48 100.1, 104.1, 90.3 90, 115.1, 90
 Resolution (Å) 60.24–1.60 (1.63–1.60)a 39.22–1.50 (1.53–1.50)a 35.37–1.60 (1.63–1.60)a 40.59–1.60 (1.63–1.60)a 60.07–1.45 (1.47–1.45)
 Rmeas 0.064 (0.721)a 0.119 (0.886)a 0.059 (0.148)a 0.060 (0.305)a 0.086 (1.458)a
 Rpim 0.034 (0.385)a 0.062 (0.472)a 0.042 (0.105)a 0.042 (0.216)a 0.021 (0.362)1
 CC1/2 0.999 (0.862)a 0.994 (0.949)a 0.997 (0.985)a 0.998 (0.976)a 1.000 (0.861)a
 <I/σ(I)> 15.1 (2.4)a 8.6 (1.8)a 16.2 (7.6)a 11.5 (2.7)a 24.7 (3.1)a
 Total observations 310,958 (15,401)a 166,790 (8167)a 140,950 (6.909)a 289,021 (14,047)a 1,931,455 (93,528)a
 Unique observations 45,919 (2312)a 25,129 (1235)a 39,574 (1931)a 81,339 (3976)a 61,265 (3026)a
 Completeness (%) 100 (100)a 100 (100)a 96.6 (95.2)a 96.8 (95.3)a 100 (100)a
 Redundancy 6.8 (6.7)a 6.6 (6.6)a 3.6 (3.6)a 3.6 (3.5)a 31.5 (30.9)a
Refinement
 Rwork/Rfree 0.167/0.196 0.180/0.213 0.160/0.184 0.185/0.220 0.167/0.197
 B-factors (A2):
 Protein 25.5 42.3 23.1 33.1 21.4
 Solvent 37.6 51.8 34.8 27.2 35.6
 Ligand 20.2 39.8 24.0 39.0 17.5
 R.m.s.d. bond lengths (Å) 0.01 0.01 0.01 0.01 0.01
 R.m.s.d. bond angles (°) 1.82 1.74 1.89 1.70 1.86
 Ramachandran statistics:
 Favored (%) 98.1 96.7 98.7 97.6 98.71
 Outliers (%) 0 0 0 0 0.32
 PDB ID 7B63 7B64 7B65 7B66 7B67
a

Values in parentheses are for the highest-resolution shell.