Table 2.

Up-regulated pathways in group H or L compared to group M in GSEA enrichment

Hallmark name	Terma description	Set sizeb	NESc	FDR q value
Epithelial mesenchymal transition§	Genes defining epithelial-mesenchymal transition, as in wound healing, fibrosis, and metastasis	198 ‡	1.87 ‡	< 0.002 ‡
		199 †	2.25 †	0 †
UV response DN†	Genes downregulated in response to ultraviolet (UV) radiation	144	1.55	0.047

^aTerm, referred to the MSigDB H (hallmark) term

^bSet size, gene set size after restricting to dataset

^cNES normalized enrichment score. Group M was set as the control group. Positive NES value indicated up-regulation in groups H or L

^†referred to comparison L vs. M

^‡referred to comparison H vs. M

^§referred to both comparisons