TABLE 2.
Novel transcripts with known functions detected in Streptomyces lividans TK24 using the Rfam database.
| Name | Locus tag | Rfam ID | RNA-seq validation1 | Sequence position |
| ASdes TB sRNA | SLIV_04927 | RF01781 | no | 1,074,703 |
| ASpks TB sRNA | SLIV_06772 | RF01782 | no | 1,528,116 |
| ASpks TB sRNA | SLIV_06774 | RF01782 | no | 1,533,336 |
| ASpks TB sRNA | SLIV_06777 | RF01782 | no | 1,538,983 |
| ASpks TB sRNA | SLIV_06779 | RF01782 | no | 1,544,263 |
| ASpks TB sRNA | SLIV_06782 | RF01782 | no | 1,549,767 |
| Streptomyces RNA 6106 | SLIV_07607 | RF02827 | yes | 1,749,289 |
| Streptomyces RNA 5676 | SLIV_10247 | RF02832 | yes | 2,368,920 |
| Streptomyces sRNA scr5239 | SLIV_12172 | RF02605 | yes | 2,796,320 |
| Streptomyces sRNA scr5239 | SLIV_14952 | RF02673 | no | 3,380,997 |
| Actinobacterial sRNA Ms_IGR-5 | SLIV_16488 | RF02471 | yes | 3,696,473 |
| Streptomyces RNA 4115 | SLIV_17827 | Scr4115 | yes | 3,971,962 |
| Bacterial small signal recognition particle RNA | SLIV_18113 | RF00169 | yes | 4,030,118 |
| Streptomyces RNA 3920 | SLIV_18667 | RF02828 | yes | 4,145,142 |
| 6C RNA | SLIV_20498 | RF01066 | yes | 4,531,561 |
| Streptomyces RNA 3202 | SLIV_21682 | RF02833 | no | 4,831,696 |
| transfer-messenger RNA | SLIV_22873 | RF00023 | yes | 5,115,155 |
| Streptomyces RNA 2736 | SLIV_23991 | RF02831 | no | 5,351,661 |
| sodF sRNA | SLIV_24507 | RF02790 | yes | 5,474,012 |
| Bacterial RNase P class A | SLIV_26257 | RF00010 | yes | 5,877,232 |
| Streptomyces RNA 1601 | SLIV_29722 | RF02830 | yes | 6,628,022 |
| 5′ ureB small RNA | SLIV_31627 | RF02514 | no | 7,030,980 |
1 “yes”: transcribed under the analyzed conditions; “no”: not transcribed under tested conditions