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. 2021 Apr 9;2(4):100227. doi: 10.1016/j.xcrm.2021.100227
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-human CD3ε Brilliant Violet 421 (clone SK7) Biolegend Cat# 344834; RRID:AB_2565675
Anti-human CD8α Alexa Fluor 488 (clone RPA-T8) Biolegend Cat# 301021; RRID:AB_2561281
Anti-human CD4 PE (clone RPA-T4) eBioscience Cat# 12-0049-42, RRID:AB_1582249
Anti-human CD45 Brilliant Violet 510 (clone HI30) Biolegend Cat# 304036; RRID:AB_2561940
Anti-mouse CD16/32 (clone 2.4G2) Biolegend Cat# 101301; RRID:AB_312800
Anti-human/primate EGF biotinylated R&D Systems Cat# BAF236; RRID:AB_356307
Streptavidin APC Biolegend Cat# 405207
Anti-human ErbB1 (ICR62) Institute of Cancer Research N/A
Anti-human ErbB2 (ICR12) Institute of Cancer Research N/A
Anti-human ErbB3/HER-3 PE (clone 1B4C3) Biolegend Cat# 324706; RRID:AB_2099569
Anti-human ErbB4/Her4 (clone H4.77.16 (Ab77)) Novus Cat# NB120-3104; RRID:AB_789269
Goat anti-mouse IgG (H+L) highly cross-adsorbed secondary Alexa Fluor Plus 488 Thermo Fisher Scientific Cat# A32723; RRID:AB_2633275
Goat anti-rat IgG (minimal x-reactivity) APC Biolegend Cat# 405407; RRID:AB_315018
7-amino actinomycin D Cayman Chemical Company Cat# 11397
Anti-mouse TER-119 PerCP-Cyanine5.5 (clone TER-119) Thermo Fisher Scientific Cat# 45-5921-82; RRID:AB_925765
Anti-Hypoxyprobe antibody, PAb2627 Hypoxyprobe Cat# HP PAb2627
Anti-human CD3 (clone F7.2.38) Dako Cat# M7254
Rabbit anti-HIF1α monoclonal (clone EP1215Y) Abcam Cat# ab51608; RRID:AB_880418
Donkey anti-mouse IgG (H+L) Alexa Fluor Plus 488 Thermo Fisher Scientific Cat# A32766; RRID:AB_2762823
Donkey anti-rabbit IgG (H+L) Alexa Fluor 568 Thermo Fisher Scientific Cat# A10042; RRID:AB_2534017
Anti-mouse CD4 FITC (clone RM4-5) eBioscience Cat# 11-0042-82; RRID:AB_464896
Anti-mouse CD8α eFluor 450 (clone 53-6.7) eBioscience Cat# 48-0081-82; RRID:AB_1272198
Anti-mouse CD3ε PE (clone 145-2C11) eBioscience Cat# 12-0031-82; RRID:AB_465496

Bacterial and virus strains

Stbl3 E. coli Thermo Fisher Scientific Cat# C737303

Biological samples

Human blood/T cells Healthy volunteers Guy’s and St Thomas’ Research Ethics Committee (REC reference 09/H0804/92)

Chemicals, peptides, and recombinant proteins

Ficoll-Paque PLUS GE Healthcare Cat# GE17-1440-02
T4 DNA ligase Thermo Fisher Scientific Cat# EL0011
RetroNectin recombinant human fibronectin fragment Takara Cat# T100B
Dynabeads human T-activator CD3/CD28 Thermo Fisher Scientific Cat# 11131D
Restriction endonucleases New England Biolabs Various, as per this paper
FuGENE HD transfection reagent Promega Cat# E2311
Recombinant human IL-4 PeproTech Cat# 200-04
Proleukin (aldesleukin), human recombinant IL-2 Clinigen Group N/A
Polybrene Santa Cruz Biotechnology Cat# NC9840454
KiCqStart SYBR green qPCR ReadyMix, with ROX Sigma-Aldrich Cat# KCQS02
TRIzol reagent Thermo Fisher Scientific Cat# 15596026
Cobalt(II) chloride Sigma-Aldrich Cat# 60818
XenoLight D-Luciferin - K+ salt bioluminescent substrate PerkinElmer Cat# 122799
RediJect coelenterazine h bioluminescent substrate PerkinElmer Cat# 760506
Collagenase I from Clostridium Histolyticum Sigma-Aldrich Cat# C0130
DNase I AppliChem Cat# A3778
Hypoxyprobe 1 Kit Hpi Hypoxyprobe Cat# HP1-200Kit
Dako EnVision + system-HRP (DAB) Agilent Technologies Cat# K4010
DAPI (4’,6-diamidino-2-phenylindole, dihydrochloride) Thermo Fisher Scientific Cat# D1306

Critical commercial assays

TaqMan gene expression assay Thermo Fisher Scientific Cat# 4331182
QIAGEN Plasmid Mini, Midi and Maxi Kits QIAGEN Cat# 12125, 12145, 12163
QIAGEN DNeasy Blood & Tissue Kit QIAGEN Cat# 69506
Pan T Cell Isolation Kit, human Miltenyi Biotec Cat# 130-096-535
EXPRESS One-Step Superscript qRT-PCR Kit Thermo Fisher Scientific Cat# 11781200
Human IL-2 ELISA Ready-SET-Go! Kit, 2. Generation eBioscience Cat# 15590997
Human IFN-Gamma DuoSet ELISA R&D Systems Cat# DY285B
UltraView Universal DAB Detection Kit Roche Cat# 760-500; RRID:AB_2753116
UltraView Universal Alkaline Phosphatase Red Detection Kit Roche Cat# 760-501

Experimental models: cell lines

SKOV3 ATCC Cat# HTB-77; RRID:CVCL_0532
HN3 Ludwig Institute for Cancer Research, London RRID:CVCL_8126
HEK293T ATCC Cat# CRL-3216; RRID:CVCL_0063

Experimental models: organisms/strains

NOD-scid IL2Rγnull (NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ) Charles River RRID:BCBC_4142

Oligonucleotides

gBlocks gene fragments Integrated DNA Technologies Various, as per this paper
GCCTACCAAGAACAACTGGAC Integrated DNA Technologies Fwd binds upstream AgeI
GGCCCTGCCCCCTCGCGCCCCAGCCGCTGGA Integrated DNA Technologies Fwd to fuse CD3ζ-ODD
TCCAGCGGCTGGGGCGCGAGGGGGCAGGGCC Integrated DNA Technologies Rev to fuse CD3ζ-ODD
GACTAATCCGGATCCTCGAGTGGCTGTTACTGGA
ATACTGTAACTGTGCTTTGAGG
Integrated DNA Technologies Rev to ODD stop XhoI
CCATGGTGAAGCGTGAGAAAAATG Integrated DNA Technologies Fwd to amplify reporter
CTCGAGTTACTTGTACAGCTCGTCCATGC Integrated DNA Technologies Rev to amplify reporter
GAGAAGGCCGGCGGTGCCCCAGCCGCTGGA Integrated DNA Technologies Fwd to fuse Luc-ODD
TCCAGCGGCTGGGGCACCGCCGGCCTTCTC Integrated DNA Technologies Rev to fuse Luc-ODD
CCTCAAAGCACAGTTACAGTATTCCAGGGAAGCGG
AGCTACTAACTTCAG
Integrated DNA Technologies Fwd to fuse Luc-ODD-2A
CTGAAGTTAGTAGCTCCGCTTCCCTGGAATACTGTA
ACTGTGCTTTGAGG
Integrated DNA Technologies Rev to fuse Luc-ODD-2A
GCGGGCCTCTTCGCTATTA Integrated DNA Technologies Rev clone 9HRE in SFG
ATCCGCCACAACATCGAG Integrated DNA Technologies Fwd clone 9HRE in SFG

Recombinant DNA

SFG CBG99Luc-P2A-EGFP This study P1
SFG HRE9 CBG99luc-ODD401-603-P2A-GFP This study P20; HypoxiLuc reporter
SFG 4αβ-2A-T1E-CD28-CD3z-ODD This study P22
SFG HRE9 4αβ-2A-T1E-CD28-CD3z This study P26
SFG HRE9 4αβ-2A-T1E-CD28-CD3z-ODD This study P23; HypoxiCAR

Software and algorithms

FlowJo v.10 Software TreeStar Inc. https://www.flowjo.com/
Prism 6 GraphPad https://www.graphpad.com/scientific-software/prism/
Snapgene GSL Biotech https://www.snapgene.com/
NIS-Elements Imaging Software Nikon https://www.microscope.healthcare.nikon.com/products/software
R version 3.5.1 The R Foundation https://www.r-project.org/

Other

Hypoxia incubator chamber STEMCELL Technologies Cat# 27310
Gas cylinders BOC Custom (at indicated gas mixes)