REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Bacterial and virus strains | ||
One ShotTM TOP10 Chemically Competent E. coli | Thermo Fisher Scientific | Cat# C404010 |
Chemicals, peptides, and recombinant proteins | ||
GlutaMAXTM Supplement | Thermo Fisher Scientific | Cat# 35050061 |
B-27TM Supplement | Thermo Fisher Scientific | Cat# 17504044 |
Penicillin-streptomycin | Thermo Fisher Scientific | Cat# 15140122 |
Human EGF | PeproTech | Cat# AF-100-15 |
Human FGF-2 | PeproTech | Cat# 100-18B |
Heparin | MP Biomedicals | Cat# 0210193125 |
Poly-D-lysine | Sigma-Aldrich | Cat# P7280 |
Laminin | Roche Diagnostics | Cat# 11243217001 |
T4 DNA Ligase | Thermo Fisher Scientific | Cat# EL0014 |
FastDigest BbsI | Thermo Fisher Scientific | Cat# ER1011 |
T4 Polynucleotide Kinase | Thermo Fisher Scientific | Cat# EK0031 |
StemProTM AccutaseTM | Thermo Fisher Scientific | Cat# A1110501 |
Puromycin-Dihydrochloride | Thermo Fisher Scientific | Cat# A1113803 |
Critical commercial assays | ||
LipofectamineTM 3000 Transfection Reagent | Thermo Fisher Scientific | Cat# L30001 |
GeneJET Plasmid Miniprep Kit | Thermo Fisher Scientific | Cat# K0503 |
GeneJET Endo-Free Plasmid Maxiprep Kit | Thermo Fisher Scientific | Cat# K0861 |
DMEM-F12 without glutamine | Thermo Fisher Scientific | Cat# 21331020 |
NeurobasalTM medium | Thermo Fisher Scientific | Cat# 21103049 |
Phusion High-Fidelity DNA Polymerase | Thermo Fisher Scientific | Cat# F530S |
Opti-MEMTM Reduced Serum Medium | Thermo Fisher Scientific | Cat# 31985062 |
QIAamp DNA Micro Kit | QIAGEN | Cat# 56304 |
QuickExtractTM DNA Extraction Solution | Lucigen | Cat# QE09050 |
Experimental models: Cell lines | ||
Neural precursor cells from adult mouse hippocampus | Laboratory of Gerd Kempermann | Line MI6 |
Oligonucleotides | ||
Hcar1_sgRNA1_fw: CACCGGTCGTGCTGTCTCA TCGAG |
(Pötzsch et al., 2021) | N/A |
Hcar1_sgRNA1_rev: AAACCTCGATGAGACAGCA CGACC |
(Pötzsch et al., 2021) | N/A |
Hcar1_sgRNA2_fw: CACCGTTCCCAGAGGCCATCTGAC |
(Pötzsch et al., 2021) | N/A |
Hcar1_sgRNA2_rev: AAACGTCAGATGGCCTCTGGGAAC |
(Pötzsch et al., 2021) | N/A |
Hcar1_genotyping_fw: AGTTTCTCTCGTGGGTGCAG | (Pötzsch et al., 2021) | N/A |
Hcar1_genotyping_rev: TGCTTGCCTGGCTCGAATAA | (Pötzsch et al., 2021) | N/A |
Atf3_sgRNA_fw: CACCGGCGGTCGCACTGACTTCTG |
This paper | N/A |
Atf3_sgRNA_rev: AAACCAGAAGTCAGTGCGACCGCC |
This paper | N/A |
Atf3_genotyping_fw: GTGGGCCAGAACATAAAGGA |
This paper | N/A |
Atf3_genotyping_rev: CCAGAGCTTTGGATGGTTCT | This paper | N/A |
U6_sequencing: GAGGGCCTATTTCCCATGATTCC |
(Ran et al., 2013) | N/A |
Recombinant DNA | ||
pSpCas9(BB)-2A-Puro (PX459) V2.0 | (Ran et al., 2013) | RRID: Addgene_62988 |
Software and algorithms | ||
Genome browser (e.g., Ensembl) | http://www.ensembl.org/Mus_musculus/Info/Index | RRID:SCR_013367 |
CRISPR design tool (e.g., E-CRISP) | http://www.e-crisp.org/E-CRISP/ | RRID:SCR_019088 |
Other | ||
Cell culture flasks (T25) | TPP Techno Plastic Products AG | Cat# 90026 |
Cell culture plates (96-well) | TPP Techno Plastic Products AG | Cat# 92696 |
Cell culture plates (6-well) | TPP Techno Plastic Products AG | Cat# 92406 |
Cell culture plates (384-well) | Corning Incorporated | Cat# 353961 |