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. 2021 Apr 28;12:2458. doi: 10.1038/s41467-021-22738-4

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — a Genome-wide Hi-C map of M. lutarioriparius. Post-clustering heatmap shows density of Hi-C interactions between contigs from LACHESIS pipeline. b Circos plot of M. lutarioriparius genome assembly. The outermost layer of colored blocks is a circular representation of the 19 pseudochromosomes, with scale mark labeling each 5 Mb. The LTR Assembly Index (LAI) score is shown in track (A). The density of GC content (B), gene (C), Gypsy (D), Copia (E), DNA TE (F), transcriptome expression level of rhizome (G), and lateral bud (H) were calculated using 100 kb non-overlap window. The innermost layer shows inter-chromosomal synteny, with colored upper-layer links representing syntenic blocks generated from the recent M. lutarioriparius WGD, and the gray low-layer links representing homologs generated from older duplications.