Table 1.
Statistics of genome assembly.
| Hi-C scaffolds | |
|---|---|
| Assembly features | |
| Number of scaffolds | 919 |
| Total size of scaffolds | 2074.80 Mb |
| Longest scaffold | 150.81 Mb |
| Shortest scaffold | 16.94 kb |
| Mean scaffold size | 2.26 Mb |
| Median scaffold size | 130.09 kb |
| N50 scaffold length | 113.46 Mb |
| L50 scaffold count | 8 |
| Scaffold GC content | 45.46% |
| Scaffold N content | 0.01% |
| Percentage of assembly in scaffolded contigs | 94.30% |
| Average number of contigs per scaffold | 2.9 |
| BUSCO (complete) | 97.40% |
| LTR Assembly Index (LAI) | 12.11 |
| Gene models | |
| Number of gene models | 68,328 |
| Mean coding sequence length | 1215 bp |
| Mean number of exons per gene | 4.77 |
| Mean exon length | 255 bp |
| Mean intron length | 727 bp |
| Non-protein-coding genes | |
| Number of miRNA gene | 521 |
| Number of tRNA gene | 1164 |
| Number of rRNA gene | 257 |
| Number of snoRNA gene | 970 |
| Number of snRNA gene | 97 |