Table 1. Detailed information for both lncRNAs and mRNAs with half-lives enriched in the nucleus and the cytoplasm.
Type | Time (h) | Num (T) | Num (N) | Num (M) | Num (C) | Ratio (N/C) | t1/2 (N) | t1/2 (M) | t1/2 (C) | Pws.test | PAOV |
---|---|---|---|---|---|---|---|---|---|---|---|
lncRNA | 0 | 17,361 | 11,728 | 3422 | 2211 | 5.30 | 3.92 | 4.06 | 4.73 | 0.00 | 5.09E-14 |
6 | 17,480 | 10,165 | 5355 | 1960 | 5.19 | 3.75 | 4.29 | 4.85 | 0.00 | 1.05E-27 | |
12 | 17,236 | 10,157 | 5257 | 1822 | 5.57 | 3.81 | 4.17 | 5.12 | 0.00 | 1.00E-30 | |
24 | 16,247 | 8,835 | 5749 | 1663 | 5.31 | 3.83 | 4.29 | 4.97 | 0.00 | 5.07E-23 | |
mRNA | 0 | 19,469 | 6,472 | 5385 | 7612 | 0.85 | 6.10 | 6.80 | 7.31 | 0.00 | 3.97E-24 |
6 | 19,717 | 5,808 | 7827 | 6082 | 0.95 | 5.36 | 6.83 | 7.91 | 0.00 | 1.69E-90 | |
12 | 19,608 | 6,416 | 7359 | 5833 | 1.10 | 5.15 | 7.11 | 8.10 | 0.00 | 1.40E-129 | |
24 | 19,231 | 6,782 | 7168 | 5281 | 1.28 | 5.07 | 7.36 | 8.34 | 0.00 | 4.07E-161 |
Time (h) column stands for four time points, namely 0, 6, 12, and 24 h, for enrichment analysis with the transcript inhibited at 0 h. For each time point. Num (T) stands for the total number of transcripts with half-lives, which is equal to the sum of Num (N) for the number of transcripts enriched in the nucleus, Num (M) for the number of transcripts in the middle state (not enriched in both the nucleus and the cytoplasm), and Num (C) for the number of transcripts enriched in the cytoplasm. Ratio (N/C) stans for the ratio of Num (N)/Num (C). t1/2 (N), t1/2 (M), and t1/2 (C) stand for the average half-lives of transcripts enriched in the nucleus, middle state, and cytoplasm, respectively. Pws.test is the P value calculated from the Kolmogorov-Smirnov test between the transcripts enriched in the nucleus and the transcripts enriched in the cytoplasm. PAOV is the P value from the one-way ANOVA among the transcripts in the nucleus, middle state, and cytoplasm, respectively.