REAGENT or RESOURCE	SOURCE	IDENTIFIER
Antibodies
CD45-AF647 (anti mouse)	BioLegend	Cat# 103124, RRID:AB_493533
DAPI	Sigma-Aldrich	Cat# D9542-1MG
CD298-PE	BioLegend	Cat# 341704
Chemicals, peptides, and recombinant proteins
Lipofectamine	Invitrogen	Cat# 11668-019
EF1a_Firefly Luciferace-T2A-mCherry (mCherry/Luc)	Biosettia	GlowCell 15-10
1× DPBS	Gibco	Cat# 14190-094
Sodium deoxycholate (SDC)	Thermo Scientific	Cat# 89904
Trizma® base (TRIS)	Sigma	Cat# T6791
Tris(2-carboxyethyl)phosphine hydrochlorid (TCEP)	Sigma	Cat# 646547
Ammonium bicarbonate	Sigma	Cat# 09830
Chloroacetamide	Sigma	Cat# C0267
Trifluoroacetic acid (TFA)	Thermo Scientific	Cat# 28904
Porcine trypsin	Promega	Cat# V5113
2-Propanol	Merck	Cat# 109634
Ammonium hydroxide solution	Sigma	Cat# 17093
HPLC water	Fisher Scientific	Cat# W6-212
Acetonitrile	Thermo Scientific	Cat# A955-212
Formic acid	Sigma	Cat# 94318
BME	R&D Biosystems	Cat# 3533-010-02
Critical commercial assays
GOLD BSA removal kit	Abcam	Cat# ab204912
Reducing agent compatible BCA assay	Thermo Fisher	Cat# 23250
SDB-RPS cartridges	PreOmics	Cat# P.O.00013
Software and algorithms
Progenesis QI	Waters	n/a
Mascot	Matrix Science	n/a
SafeQuant R package	GitHub	n/a
Experimental models: cell lines
MDA-MB-231 LM2	Massague Lab, MSKCC	n/a
Experimental models: organisms/strains
Mouse: NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ	The Jackson Laboratory	Cat# 5557
Other
Benchtop centrifuge	n/a	n/a
Thermomixer	Eppendorf	Cat #EP5382000023
Biruptor Pico	Diagenode	Cat# B01060010
VialTweeter sonicator	Hielscher	model UIS250v
Vacuum concentrator	Labconco	Cat# 7810016
Nozzle Tip, 200 Micron	BD Biosciences	Cat# 645895
Plate reader/ nanodrop	BMG Labtech	SpectroStar nano
EASY-nLC 1200 system	Thermo Scientific	Cat# LC140
Orbitrap Fusion Lumos Tribrid Mass Spectrometer	Thermo Scientific	n/a