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Solving times for: (i) genomes with a varying number of duplicate occurrences, totaling 20,000 marker occurrences per genome; (ii) genome pairs with a varying number of linear chromosomes with 20,000 marker occurrences per genome; (iii) varying number of DCJs and indels applied by the simulation to genomes of 35,000 marker occurrences; and (iv) genome pairs with a varying total number of marker occurrences from both genomes.
